Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01498 ATGTCTCATACCATGAAGCAATGTCTACACCTTAGAAATCCTCATGTACTTGGTGTGATCTCTTTAATTATAATATTGGGATCACTAAATGTGAAGGTAGCAGAGTGTAGGGTTTATAGTGGATTGGCCAACATTGAATATCCTGCCATCAATTGCCGAAAGCACAGTGCAGTTTTGACAGATTTTGGTGGAGTTGGAGATGGGAAAACATCCAACACAAAGGTCTTTGAATCTGCCATAACCAAACTCAGCCAATATGCTTCCGATGGAGGTGCAACCCTTATTGTGCCACCTGGGAAATGGCTAACCGGACCCTTCAATCTCACCAGCCATTTCACTCTTTTTCTTCAAAAGGGTGCTGTTATTCTTGCTTCTCAGAATGAACTAGAATGGCCTCATCTTCCTGTGCTACCTTCTTATGGAAGAGGAAGAGATGCTCCTGGTGGAAGGTTTAGCAGTCTAATTTTTGGGACTAATCTCACTGATGTTGTAATTACTGGTCAAAATGGTACAATTGATGGACAAGGATCTTATTGGTGGGACAAGTTCCACAAGAAACAATTGACTCTCACTAGGCCCTACATGATTGAAATCATGTACTCAGATAAAATCCAAATATCAAGTCTCACTTTGGTCAATTCCCCAACTTGGTTTGTCCATCCAGTTTACAGCAGTAACATAATTATAACAGGGCTCACCATTCTTGCCCCAGTGGATTCTCCAAATACAGATGGCATAGACCCAGATTCATGTACAAACACTAGGATTGAAGACTGCTACATTGTTTCTGGTGATGATTGCATTGCAGTAAAAAGTGGTTGGGATGAGTATGGAATTAAATTTGGAAAGCCAACACAACACTTAGTCATTAGAAGGGTCACTTGCATCTCCCCAGACAGTGCCATGGTTGCATTAGGCAGTGAAATGTCTGGTGGAATTGAAGATGTTAGGGTTGAAGATCTCACTGCCATCAACACTGAATCAGCTATTAGAATCAAAACAGCAGTTGGTAGAGGTGCATATGTGAAGAACATATTTGTCAGAGGATTGAATCTGAACACCATGAAATATGTATTTTGGATGACTGGCTCTTATGGAGAACACCCTGACCCTAAATTTGATCCCAAAGCACTTCCTATTATTACAGGAATAAATTATAAAGATATCGTTGCGAAGAACGTTACATATTCTGCAAAACTTGAAGGAATCTCAAATGACCCTTTCACTGGAATCTGCATTTCTAATGTGACAATCCAAGTGAGTGCCCAACAAAAGAAGCTTCAATGGAATTGCACTAATGTTGCTGGAATTACCAATAATGTCACTCCTAGCCCTTGTGCATTGCTGCCACAAAAAGATAAAACTGATTGTGTTTTTCCAAATGACAAACTACCCATTGAAAATGTTCAATTCAAGACATGTTCCTTATAA 1431 0.399 MSHTMKQCLHLRNPHVLGVISLIIILGSLNVKVAECRVYSGLANIEYPAINCRKHSAVLTDFGGVGDGKTSNTKVFESAITKLSQYASDGGATLIVPPGKWLTGPFNLTSHFTLFLQKGAVILASQNELEWPHLPVLPSYGRGRDAPGGRFSSLIFGTNLTDVVITGQNGTIDGQGSYWWDKFHKKQLTLTRPYMIEIMYSDKIQISSLTLVNSPTWFVHPVYSSNIIITGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCIAVKSGWDEYGIKFGKPTQHLVIRRVTCISPDSAMVALGSEMSGGIEDVRVEDLTAINTESAIRIKTAVGRGAYVKNIFVRGLNLNTMKYVFWMTGSYGEHPDPKFDPKALPIITGINYKDIVAKNVTYSAKLEGISNDPFTGICISNVTIQVSAQQKKLQWNCTNVAGITNNVTPSPCALLPQKDKTDCVFPNDKLPIENVQFKTCSL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01498 476 PANTHER PECTIN LYASE-RELATED 25 467 - -
Phco5g01498 476 Pfam Glycosyl hydrolases family 28 153 435 IPR000743 GO:0004650|GO:0005975
Phco5g01498 476 Gene3D - 35 443 IPR012334 -
Phco5g01498 476 SMART pbh1 313 334 IPR006626 -
Phco5g01498 476 SMART pbh1 251 272 IPR006626 -
Phco5g01498 476 SMART pbh1 224 250 IPR006626 -
Phco5g01498 476 SUPERFAMILY Pectin lyase-like 52 461 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01498 Phco-Chr5 50721845 50724583 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01498 5 50721845 50724583 Phco5g01498 5 50721845 50724583 ECH