Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01455 ATGGACAGGCTCATAAGGTTAGAGCCATCAAACACAGTCATAATCAGAGTAGAACCAGGCCAAAAGTGGCAAGGCAGAATCACCTTACACAACGTCATGCACACAATGCCAGTGGCCTTCTGGCTTCAACCCCTCATCAAAACCCGTTACGTAGTCAAACCCCACTCAGGTATCATCTCCCCCTTAGCTACACTCACCGTAGAAATCACCTATCATATACCCTCCACCACCACCCTCCCCCACTCCTTCCCTCACTCCAACGACTCCTTCCTCCTACACAGCGTCTTGGTCCCCGGCGCCGCCATCAGGGAACCCTCCTCCATGTTCGACGCCGTCCCCTCCGACTGGTTCAAGAAAAAACAAGTCTTCATTGACAGCGGTATAAAGGTCATGTTTTTAGGGTCACACATTCTGGCCCAGTTGGTCTCGCTCGGCGAAAACGATGAGGTCAGGGAAGCCCTAGAGAGAAGCGACCCTTCATGGAGGATTGTGAACAGCACCGACCCACGTGGCCAGACGTTGCTCCACTTGGCGATCGCGCAGGGAAGACCTGATCTCGTTCAACTGCTTCTGGAGTTCGAGGCTGATACCGAGGCAACGAACCGTTCTGGGTTGACCCCACTTGAGGCTGCAGCCTCGTGTAACGAAACATTGATCGTGGAGCTTCTTCTGGCCCGCAGGGCCAACACGGAGCGAGCCGAATGGGCCGTGTTCGGGCCGATTCATCACGCGGCTAGAGGAGGACACGTGGAGGTTCTGAGACTGCTCTTGCTCAAAGGCGGCAAAGTGGACTCGCTCACGAAAGATGGCAACACTGCTTTGCACGTTGCGGTTGAGGAGCGTAGAAGAGACTGTGTTAGACTCCTTCTAGCCAACGGTGCCAGAACTGACCTTAAGAACACAAGAGAAGGTGACACCCCTTTGCACATGGCAGCAGCAGCAGGAGACGAGAGCATGGTGAAGCTCCTGCTGCAAAAGGGTCGTGCCAACAAAGACATTCGAAACGCGCAAGGCAAAACCGCCTACGACGTCGCAGTGGAGAACGGCCACGAGGGCCTCTTCGACGCCCTGAGTCTGGGCGACAAGCTGTGCGCGGCTGCAAAGAAAGGCGAAGTGAGAACCATCCAGAAGCTTCTGGAGAAGGGCGCGGACCTCAACGGGAGGGACCAGCACGGTTGGACCGCGCTGCACCGAGCCTCGTTCAAAGGGCGAATGGACGTGGTGAAGGTTCTAGTGGAGAGAGGGGTGGAGGTGGACGCGAAGGACGAAGAGGGGTACACGGCACTGCACTGCGCGGCGGAGGCGGGGCATGCCGACGTGACGGAGTTTTTGGTGAAGAAAGGTGCGGATGTTGAGGCGAGGACTAGGAAGGGTGTGAACGCGTTGCAGATAACAGAGTCGTTGAACTACGAGGGGATCACGAGGGTTCTTGTTAACGGTGGGGCTAGTAGGGAAAATTCTGATAAAGTGGCTGCTTTTGGTGCAATTGCATTTGGGAGTAAGATAACGGAAGTGAAGAAGAGGAGAAGTGGTGAAAGACGTAATAACAGATTGTTGAATAATGGTGCTGGTTTTGGTCGTTCAGTGGCTCTGGCTGTGCTCTAA 1605 0.5502 MDRLIRLEPSNTVIIRVEPGQKWQGRITLHNVMHTMPVAFWLQPLIKTRYVVKPHSGIISPLATLTVEITYHIPSTTTLPHSFPHSNDSFLLHSVLVPGAAIREPSSMFDAVPSDWFKKKQVFIDSGIKVMFLGSHILAQLVSLGENDEVREALERSDPSWRIVNSTDPRGQTLLHLAIAQGRPDLVQLLLEFEADTEATNRSGLTPLEAAASCNETLIVELLLARRANTERAEWAVFGPIHHAARGGHVEVLRLLLLKGGKVDSLTKDGNTALHVAVEERRRDCVRLLLANGARTDLKNTREGDTPLHMAAAAGDESMVKLLLQKGRANKDIRNAQGKTAYDVAVENGHEGLFDALSLGDKLCAAAKKGEVRTIQKLLEKGADLNGRDQHGWTALHRASFKGRMDVVKVLVERGVEVDAKDEEGYTALHCAAEAGHADVTEFLVKKGADVEARTRKGVNALQITESLNYEGITRVLVNGGASRENSDKVAAFGAIAFGSKITEVKKRRSGERRNNRLLNNGAGFGRSVALAVL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01455 534 SUPERFAMILY PapD-like 2 141 IPR008962 -
Phco5g01455 534 SMART ANK_2a 424 453 IPR002110 GO:0005515
Phco5g01455 534 SMART ANK_2a 303 333 IPR002110 GO:0005515
Phco5g01455 534 SMART ANK_2a 269 298 IPR002110 GO:0005515
Phco5g01455 534 SMART ANK_2a 391 420 IPR002110 GO:0005515
Phco5g01455 534 SMART ANK_2a 337 387 IPR002110 GO:0005515
Phco5g01455 534 SMART ANK_2a 203 232 IPR002110 GO:0005515
Phco5g01455 534 SMART ANK_2a 170 199 IPR002110 GO:0005515
Phco5g01455 534 SMART ANK_2a 236 265 IPR002110 GO:0005515
Phco5g01455 534 Pfam Ankyrin repeats (many copies) 301 345 IPR002110 GO:0005515
Phco5g01455 534 Pfam Ankyrin repeats (many copies) 164 209 IPR002110 GO:0005515
Phco5g01455 534 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Phco5g01455 534 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Phco5g01455 534 ProSiteProfiles Ankyrin repeat region circular profile. 269 300 - -
Phco5g01455 534 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Phco5g01455 534 Gene3D Immunoglobulins 1 129 IPR013783 -
Phco5g01455 534 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 361 478 - -
Phco5g01455 534 ProSiteProfiles Ankyrin repeat region circular profile. 170 202 - -
Phco5g01455 534 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Phco5g01455 534 PRINTS Ankyrin repeat signature 304 319 IPR002110 GO:0005515
Phco5g01455 534 PRINTS Ankyrin repeat signature 440 454 IPR002110 GO:0005515
Phco5g01455 534 ProSiteProfiles Ankyrin repeat profile. 240 268 IPR002110 GO:0005515
Phco5g01455 534 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
Phco5g01455 534 SUPERFAMILY Ankyrin repeat 164 489 IPR036770 -
Phco5g01455 534 ProSiteProfiles Ankyrin repeat region circular profile. 303 327 - -
Phco5g01455 534 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Phco5g01455 534 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 133 IPR000535 -
Phco5g01455 534 Pfam Ankyrin repeats (3 copies) 364 454 IPR002110 GO:0005515
Phco5g01455 534 Pfam Ankyrin repeats (3 copies) 240 299 IPR002110 GO:0005515
Phco5g01455 534 Gene3D - 360 492 IPR036770 -
Phco5g01455 534 ProSiteProfiles Ankyrin repeat region circular profile. 424 456 - -
Phco5g01455 534 ProSiteProfiles Ankyrin repeat region circular profile. 240 264 - -
Phco5g01455 534 ProSiteProfiles Ankyrin repeat profile. 363 390 IPR002110 GO:0005515
Phco5g01455 534 Gene3D - 235 359 IPR036770 -
Phco5g01455 534 ProSiteProfiles Ankyrin repeat profile. 303 327 IPR002110 GO:0005515
Phco5g01455 534 Gene3D - 130 234 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01455 Phco-Chr5 50050258 50051976 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01232 2 39242188 39243756 Phco5g01455 5 50050258 50051976 PCT