Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01427 ATGAGTGAGGAATCTAGTTTGCTTAAAGAAAGCATATCAATGAATGACACCATGGTGGAAGAGGTTGAAGAAAGAGATCCAGAAAGCAATCCACTGAATGAGCCACTACTCAAGAGGAACAGGACATTGTCTTCCAATCCACTTGCTCTAGTTGGAGCAAAGGTTTCCTACATAGAAAGCTTGGACTATGAGATCAATGAGAATGACCTGTTCAAACAAGATTGGAGGAGCAGATCAAGAGCTCAAGTGTTGCAGTACATATTCTGTAAATGGAGTCTTGCCTTCCTTGTTGGACTTCTCACTGGTATCATAGCCACTTTGATCAATCTGTCTGTTGAGAACATTGCAGGGTACAAGCTTCTTGCTGTTGTCAACTTTATCCAAAACGAAAGGTACTTGACGGGTTTCCTATATTTCACTGGAGCTAATTTCATTTTGACATTTGTTGCTTCTATTCTGTGTGTGTGTTTTGCACCCACAGCTGCTGGACCTGGAATACCCGAAATCAAAGCTTATCTTAATGGGGTTGATACTCCCAACATGTATGGTGCCACAACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTATCTGCAGGCCTAGACTTAGGAAAAGAGGGGCCCTTGGTACACATTGGTAGCTGCATTGCTTCCTTACTTGGCCAAGGTGGCCCTGACAATTACAGGATCAAGTGGCGCTGGCTGAGGTATTTCAACAATGATCGTGACCGTCGCGATCTCATCACCTGTGGTGCTTCTTCAGGGGTGTGTGCAGCTTTCAGGGCACCTGTGGGTGGAGTTCTCTTTGCTCTTGAGGAGGTGGCAACTTGGTGGAGAAGTGCTCTCCTCTGGAGAACTTTCTTCAGCACAGCTGTGGTTGTTGTAGTGCTAAGGGCCACCATTGAACTTTGCCACAAAGGAAAATGTGGTCTTTTTGGTGAAGGGGGGCTCATCATGTTTGATGTGAGTGATGTCACTGTGACCTACAATGTAATGGATGTCATCCCTGTTGTTATCATTGGAGTCCTTGGTGGGGTATTGGGAAGCCTTTACAACTACCTTCTGCATAAAGTCCTCCGTCTCTACAATCTTATCAACCAGAAAGGAAAAATATACAAGCTCCTCCTTAGTCTTTCAGTTGCACTGGTCACATCAATATGCCAATATTGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATTCTTCCCTTTCAGAAGTGTGCCCCACCAACGGGCGTTCTGGAAACTTCAAGCAATTCAACTGCCCAAATGGCTACTACAATGATCTTGCTACTCTGCTTCTGACCACCAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCCTCTTGAGTACCAACCCTCCTCCATCCTAATTTTCTTTGCTCTCTATTGCATACTAGGACTAATCACCTTTGGAATTTCTGTGCCATCAGGGCTCTTCCTACCAATCATTCTCATGGGGTCCGGCTATGGCCGGCTTCTTGGAATCCTCATGAGACCTTATACAAACATTGATCAAGGGCTGTTTGCAGTCCTTGGTGCAGCCTCACTTATGGCTGGATCTATGAGAATGACTGTGTCCCTTTGTGTGATCTTCCTTGAACTAACCAACAACCTTCTCCTACTACCAATAACCATGATTGTTCTCCTCATAGCTAAAACTGTTGGAGATAGCTTCAACCCAAGCATCTATGAGATCATACTGCACTTGAAAGGCCTCCCTTTCATGGATGCAAACCCTGAGCCATGGATGAGAAATCTCACTGTGGGAGAACTTGTTGATGTGAAGCCAGCAGTGATTAGCTTCAGAGGAGTAGAAAAGGTAGCCAATATAGTCAATGCCTTGAAAAACACTACACACAATGGTTTTCCTGTCATGGATGGTGGAGTGGTGCCAACAACAGGAGTGGCCAGTGAGGCTACAGAACTGCATGGAATCATTCTGAGAGCACACCTTATTCAAGTGCTAAAGAAGAAGTGGTTCTTGAAGGAGAAAAGGAGAACTGAGGACTGGGAAGTGAGAGAGAAATTTACATGGGTAGAGCTGGCTGAGAGAGAAGGGAACATTGAAGATGTAGCCGTGACTAAAGAAGAAATGGAGATGTTTGTTGATCTTCACCCTCTCACCAATACAACTCCCTTTACAGTGCTGGAGAGTATGTCAGTAGCAAAAGCCTTGGTTCTCTTCAGACAAGTAGGACTTCGCCATATGCTTGTTGTGCCAAAGTATCAAGCATCTGGGGTGTCTCCTGTGATTGGGATCTTGACTAGGCAGGATCTACTGGCATACAACATTCTGACAGTGTTTCCTCACTTGACAAAATCAAAGAGAAAGTGA 2349 0.4461 MSEESSLLKESISMNDTMVEEVEERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRAQVLQYIFCKWSLAFLVGLLTGIIATLINLSVENIAGYKLLAVVNFIQNERYLTGFLYFTGANFILTFVASILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRATIELCHKGKCGLFGEGGLIMFDVSDVTVTYNVMDVIPVVIIGVLGGVLGSLYNYLLHKVLRLYNLINQKGKIYKLLLSLSVALVTSICQYCLPFLAKCTPCDSSLSEVCPTNGRSGNFKQFNCPNGYYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSILIFFALYCILGLITFGISVPSGLFLPIILMGSGYGRLLGILMRPYTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVISFRGVEKVANIVNALKNTTHNGFPVMDGGVVPTTGVASEATELHGIILRAHLIQVLKKKWFLKEKRRTEDWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNTTPFTVLESMSVAKALVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPHLTKSKRK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01427 782 ProSiteProfiles CBS domain profile. 713 779 IPR000644 -
Phco5g01427 782 PRINTS Chloride channel signature 479 499 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phco5g01427 782 PRINTS Chloride channel signature 529 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phco5g01427 782 PRINTS Chloride channel signature 190 209 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phco5g01427 782 PRINTS Chloride channel signature 159 176 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phco5g01427 782 PRINTS Chloride channel signature 567 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phco5g01427 782 PRINTS Chloride channel signature 511 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phco5g01427 782 PRINTS Chloride channel signature 254 273 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phco5g01427 782 Pfam Voltage gated chloride channel 147 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phco5g01427 782 SMART cbs_1 716 769 IPR000644 -
Phco5g01427 782 SMART cbs_1 602 661 IPR000644 -
Phco5g01427 782 CDD ClC_6_like 59 580 - -
Phco5g01427 782 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 19 770 - -
Phco5g01427 782 SUPERFAMILY Clc chloride channel 68 582 IPR014743 -
Phco5g01427 782 PRINTS Plant CLC chloride channel signature 307 314 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phco5g01427 782 PRINTS Plant CLC chloride channel signature 275 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phco5g01427 782 PRINTS Plant CLC chloride channel signature 64 72 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phco5g01427 782 PRINTS Plant CLC chloride channel signature 289 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phco5g01427 782 PRINTS Plant CLC chloride channel signature 431 447 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phco5g01427 782 Gene3D Clc chloride channel 82 582 - -
Phco5g01427 782 SUPERFAMILY CBS-domain pair 584 767 IPR046342 -
Phco5g01427 782 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 767 - -
Phco5g01427 782 MobiDBLite consensus disorder prediction 16 32 - -
Phco5g01427 782 Gene3D - 583 772 IPR046342 -
Phco5g01427 782 MobiDBLite consensus disorder prediction 1 35 - -
Phco5g01427 782 Pfam CBS domain 715 767 IPR000644 -
Phco5g01427 782 FunFam Chloride channel ClC3 82 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01427 Phco-Chr5 49693540 49697989 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01064 2 16451326 16455743 Phco5g01427 5 49693540 49697989 PCT