Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01336 ATGGCTTCTTCAATGATCTCCTCCCCCGCTGTGACCACCGTTAACCGTGCCGGTGCCGGTGCCGGTATGGTGGCTCCATTCAGTGGGCTGAAGTCCTTGGGAGGGTTCCCAAGCAGGAAGACGAACAATGATATTACTTCCGTTGCGAACAACGGTGGAAGAGTGCAATGCATGCAGGTGTGGCCAACAGTTGGGAAGAAGAAGTTCGAGACTCTTTCGTACCTGCCAGACCTGACTGAGGCACAATTGGCAAAGGAAGTAGAATACCTTCTTAAGAATAAATGGATTCCCTGCTTGGAATTCGAATTGGAGCATGGTTTCGTGTACCGTGAACACAACAGGTCACCTGGATACTATGATGGAAGGTACTGGACGATGTGGAAGCTGCCTATGTTTGGGTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCCAAGACTGCTCACCCCGATGGATTCATCCGTATCATTGGATTTGACAACGTTCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCACCAGGCTACTAG 543 0.5028 MASSMISSPAVTTVNRAGAGAGMVAPFSGLKSLGGFPSRKTNNDITSVANNGGRVQCMQVWPTVGKKKFETLSYLPDLTEAQLAKEVEYLLKNKWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01336 180 PRINTS RuBisCO small subunit signature 46 64 IPR024681 -
Phco5g01336 180 PRINTS RuBisCO small subunit signature 20 37 IPR024681 -
Phco5g01336 180 PRINTS RuBisCO small subunit signature 95 110 IPR024681 -
Phco5g01336 180 PRINTS RuBisCO small subunit signature 117 146 IPR024681 -
Phco5g01336 180 PRINTS RuBisCO small subunit signature 67 93 IPR024681 -
Phco5g01336 180 PRINTS RuBisCO small subunit signature 151 177 IPR024681 -
Phco5g01336 180 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 178 IPR024681 -
Phco5g01336 180 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 58 180 - -
Phco5g01336 180 SMART RuBisCO_small_2_a 68 177 IPR000894 -
Phco5g01336 180 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 67 178 IPR000894 -
Phco5g01336 180 Pfam Ribulose bisphosphate carboxylase, small chain 69 177 IPR000894 -
Phco5g01336 180 CDD RuBisCO_small 67 177 IPR000894 -
Phco5g01336 180 Gene3D Ribulose bisphosphate carboxylase, small subunit 58 180 IPR036385 -
Phco5g01336 180 SUPERFAMILY RuBisCO, small subunit 58 179 IPR036385 -
Phco5g01336 180 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 44 IPR024680 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01336 Phco-Chr5 48409351 48410107 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01336 5 48409351 48410107 Phco5g01336 5 48409351 48410107 ECH