Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01246 ATGTCCACCATGCTCTCTCTATCAGCTTCTTATTACTCTTGTTCTTCTTCTCGTTTCTTCTGCCCCTTCTCTTCTCGCCTCTTCTTCCCTCGTGCTCGTCGCATTCCTCTCTCTCGCACTCGCCGTAATCTTTCAGTTGTCGCGTCAGACCGAGAAAATGGTGTCTTTAGATCTCCCGAGATTGCCAAAACCTTCGACTTTGCGGCGGAGGAACGCATATACAATTGGTGGGAGTCTCAAGGGTATTTTAGGCCGAACTTTGACAGGGGAAGTGATCCTTTTGTGATACCGATGCCGCCGCCTAATGTTACTGGTTCTCTGCACATGGGTCATGCCATGTTTGTGACACTTGAGGATATTATGATTAGGTACAACCGCATGAAGGGAAAGCCAACCCTTTGGCTTCCGGGGACTGATCATGCTGGAATTGCAACTCAGTTGGTTGTTGAAAGAATGCTTGCTTCCGAAGGAATAAAAAGGACTGAAATGAATAGAGATGAATTCACAAAAAGGGTTTGGCAGTGGAAAGAGAAATATGGCGGAACTATCACAAACCAGATCAAGAGACTTGGTGCTTCTTGTGATTGGTCTAGAGAGCATTTTACTCTTGATGAACAGCTAAGTCAAGCTGTAGTTGAGGCATTTGTTAGACTTCATGAGAAAGGTTTGATTTATCAAGGTTCATATATGGTAAACTGGTCACCTACTCTACAAACTGCTGTTTCTGACTTGGAAGTTGAGTATTCTGAAGAGTCTGGATATCTGTATTATATCAAGTATCGCGTTGCCGGAAGGAGTGACTTCTTGACTGTGGCTACAACACGACCAGAGACTTTATTTGGTGATGTGGCACTAGCAGTTCATCCAGAGGATGATCGATATTCCAAGTATATTGGTATGATGGCAATTGTACCTCAAACATTTGGCCGTCATGTTCCTATCATTGATAATAAGCATGTGGATAAAGATTTTGGAACTGGAGTGTTGAAAATTAGTCCAGGACATGACCATGATGACTATTTGCTTGCTCGAAAGCTTGGTCTTCCGATTCTTAATGTGATGAATAAGGATGGAACACTAAATGATGATACTGGGTTGTACAGTGGCCTTGATCGTTTTGAGGGTCGGAAAAAGTTATGGGCAGAGCTTGAGGAGACAGGATTAGCTGTGAAAAAGGAACCCCACACATTACGAGTTCCTAGATCTCAACGTGGTGGAGAAGTGATAGAGCCACTTGTTAGTAAGCAGTGGTTTGTGAGTATGGAGCCTCTTGCTGAGAAAGCACTTCAAGCAGTTCAAAAGAGAGAATTGATTATAGTTCCAGAAAGATTTGAGAAGATTTACAACCATTGGCTCTCCAACATTAAGGATTGGTGTATAAGCAGACAACTATGGTGGGGACACAGGATACCTGTATGGTACATTGCGGGAAAAGACAATGAAGAGGAATATATAGTTGCTAGAAATGCTAAGGAAGCACTTGAGAAAGCTCACAAGAAATATGGGAAGGATGTAGAAATATATCAAGATCCTGATGTTCTTGATACTTGGTTTTCTAGTGCGCTTTGGCCTTTTAGTACCCTTGGGTGGCCAGATATATGTGCAGAGGATTTTAAGCGATTCTATCCTACTACAATGCTTGAAACTGGGCATGACATATTGTTCTTTTGGGTGGCAAGAATGGTGATGATGGGGATTGAATTCACTGGAAAGGTCCCATTTTCTTATGTTTATTTGCATGGACTCATCAGGGATTCACAGGGCAGAAAAATGTCTAAAACATTGGGAAATGTAGTGGACCCCCTTGACACTATCAAAGAATTTGGGACAGATGCTTTACGTTTCACACTAGCTTTAGGCACAGCTGGCCAGGACCTTAATTTGTCGACTGAGCGGTTGACCTCCAACAAAGCCTTCACAAACAAATTGTGGAATGCTGGCAAATTTATATTGCAGAACCTGCCTAATGAGAGTGATACTTCTGCTTGGGAAAAAATATTGTCTTATAAGTTTGACAATGAAGGCACTGTGGTTAATCTTCCTTTACCTGAGTGTTGGGTGGTGTCAAAACTTCACTTGCTCATTGAATCTGTCACTGCTAGCTATGACAAATTTTATTTTGGAGAAGTGGGACGAGAAACATATGACTTCTTTTGGGCTGATTTTGCTGATTGGTACATTGAGGCTAGTAAAGGGCGTCTTTACCACTCTGGAGTTGGAGACAACTCTGCTGCTTCAGTGGCACAGGCTGTTCTGTTATATACTTTTGAGAACATACTCAAAGTTTTGCATCCTTTCATGCCATTTGTAACTGAGGAGTTGTGGCAGGCACTCCCTAACCGGAAACATGCTCTTATTGTATCACCTTGGCCAGAGACTCAACTTCCAAGAGACACCAGCTCTATAAAAAAGTTTGAAAATTTGCAGGCTTTGGTTAGAGCTATCAGGAATGCTCGGGCAGAATATGTTGTTGAGCCAGCAAAACGTATATCAGCATCCGTGGTTGCAAACAATGAAGTTATAGACTATATTGCTGAAGAACGAGAGGTTCTAGCTCTTCTCTCTCGGCTAGATTTACAAAATCTGGAATTCACAAATTCTTCTCCAGGAAATGCAGATCAGTCAGTTCATCTCGTGGCTGGAGAGGGACTAGAGGCTTATCTCCCTCTGGCCGATATGGTTGATATTTCTGCAGAAGTTGAACGACTTTCAAAGCGTCTTTCCAAGATGCAGAAGGAGTACGATGCGTTAAAATCTAAACTCAATTCCCCTCAATTTGTAAAGAAGGCACCGGAAGATGTGGTCCGTGGGGTGCAAGAAAAAGCCACAGAAGCAGAAGAGAAGATCAATTTAACAAAGAAACGACTTGAATTCCTGAGAACTAACGTCGTAGTGTCACAATAG 2904 0.4246 MSTMLSLSASYYSCSSSRFFCPFSSRLFFPRARRIPLSRTRRNLSVVASDRENGVFRSPEIAKTFDFAAEERIYNWWESQGYFRPNFDRGSDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMIRYNRMKGKPTLWLPGTDHAGIATQLVVERMLASEGIKRTEMNRDEFTKRVWQWKEKYGGTITNQIKRLGASCDWSREHFTLDEQLSQAVVEAFVRLHEKGLIYQGSYMVNWSPTLQTAVSDLEVEYSEESGYLYYIKYRVAGRSDFLTVATTRPETLFGDVALAVHPEDDRYSKYIGMMAIVPQTFGRHVPIIDNKHVDKDFGTGVLKISPGHDHDDYLLARKLGLPILNVMNKDGTLNDDTGLYSGLDRFEGRKKLWAELEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVSMEPLAEKALQAVQKRELIIVPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIAGKDNEEEYIVARNAKEALEKAHKKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDICAEDFKRFYPTTMLETGHDILFFWVARMVMMGIEFTGKVPFSYVYLHGLIRDSQGRKMSKTLGNVVDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFILQNLPNESDTSAWEKILSYKFDNEGTVVNLPLPECWVVSKLHLLIESVTASYDKFYFGEVGRETYDFFWADFADWYIEASKGRLYHSGVGDNSAASVAQAVLLYTFENILKVLHPFMPFVTEELWQALPNRKHALIVSPWPETQLPRDTSSIKKFENLQALVRAIRNARAEYVVEPAKRISASVVANNEVIDYIAEEREVLALLSRLDLQNLEFTNSSPGNADQSVHLVAGEGLEAYLPLADMVDISAEVERLSKRLSKMQKEYDALKSKLNSPQFVKKAPEDVVRGVQEKATEAEEKINLTKKRLEFLRTNVVVSQ 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01246 967 Coils Coil 893 920 - -
Phco5g01246 967 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 101 112 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco5g01246 967 Gene3D - 587 825 - -
Phco5g01246 967 FunFam Valine--tRNA ligase 587 825 - -
Phco5g01246 967 SUPERFAMILY tRNA-binding arm 895 959 IPR010978 GO:0000166
Phco5g01246 967 NCBIfam valine--tRNA ligase 62 941 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco5g01246 967 Pfam Valyl tRNA synthetase tRNA binding arm 895 959 IPR019499 GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438
Phco5g01246 967 CDD Anticodon_Ia_Val 628 778 IPR033705 -
Phco5g01246 967 SUPERFAMILY Nucleotidylyl transferase 68 635 - -
Phco5g01246 967 FunFam Valine--tRNA ligase, mitochondrial 63 259 - -
Phco5g01246 967 Pfam Anticodon-binding domain of tRNA ligase 686 830 IPR013155 GO:0004812|GO:0006418
Phco5g01246 967 CDD ValRS_core 92 628 - -
Phco5g01246 967 Pfam tRNA synthetases class I (I, L, M and V) 73 629 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco5g01246 967 PANTHER VALYL-TRNA SYNTHETASES 56 958 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco5g01246 967 Hamap Valine--tRNA ligase [valS]. 61 960 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco5g01246 967 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 249 400 IPR009008 GO:0002161|GO:0006418
Phco5g01246 967 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 641 910 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco5g01246 967 Coils Coil 935 962 - -
Phco5g01246 967 Gene3D HUPs 371 586 IPR014729 -
Phco5g01246 967 FunFam Valine--tRNA ligase 888 959 - -
Phco5g01246 967 Gene3D HUPs 64 272 IPR014729 -
Phco5g01246 967 Gene3D - 293 360 IPR009008 GO:0002161|GO:0006418
Phco5g01246 967 PRINTS Valyl-tRNA synthetase signature 288 305 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco5g01246 967 PRINTS Valyl-tRNA synthetase signature 510 531 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco5g01246 967 PRINTS Valyl-tRNA synthetase signature 94 105 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco5g01246 967 PRINTS Valyl-tRNA synthetase signature 404 417 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco5g01246 967 PRINTS Valyl-tRNA synthetase signature 542 560 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco5g01246 967 Gene3D - 888 959 IPR037118 -
Phco5g01246 967 FunFam Valine--tRNA ligase chloroplastic/mitochondrial 2 351 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01246 Phco-Chr5 46549193 46606446 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01246 5 46549193 46606446 Phco5g01246 5 46549193 46606446 ECH