Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01220 ATGCTGCACCATTTCAACATGAACATCTTGTTCACGATCCTTTTAGCTGTCACCACAGCATGTTTCTATGTCCCTGAGTTGAAACACCGAGGTTCCATCATAGTAGCATCATGCATGGCCATGGCCATGTTATACCACTTTCTTATGAACCGACCCTGCAAAGTTTACTTGGTGAACTTTGCATGCTTCAAGCCAAGCGTGGCGTGCCTTTGCTCGAAGGAAACGTTGCTGGACAGAGCAAAGCGCGTGGGGTTTCTCTCCGACGAGAACTACAAGCTCGTGACCAAGATTCTCGACAGGTCTGGGTTGGGACCGTGGACCTATGTTCCAGAGGGGTTGTTGGCGATTCCGCCGAAGCTAACGTTGGACGAGGCAAGGAAGGAAACAGACACGGTGCTCTTCGGAGCTGTTGATGAGCTTTTGGCGAAAACTGGGATTGAGGCGAAGGACATAGGGATTCTTGTGGTGAATTGTTGCTTGTTCAATCCCACACCGTCGCTGTCTGACTCCATTATTAATCGGTACAAGCTTCGAGGGAACATTTTGGCGTATAATCTCAGTGGCATGGGGTGCAGTGCAGGTGTTCTTGCTGTTGACTTCGCCAAACAGCTCCTTCAGGCACACCCGAACTCGTACGCGCTGGTTCTGAGCACGGAAAATGAGATCTCGAGCATGTACTGGGGCAACAACCCGTCCATGCTGCTGGTCAACTGCCTCTTCCGCATGGGTGGGTCCGCCGCGCTCCTCTCCAGCCATCCGTCTGACCGCTCCCGCGCAAAGTACCAGCTCCTCCACACGCTCCGAACGCACGTAGGCGCCGACGACAACAGCTACAGCTGTGTGTTCCAGGAGGAGGATGAGGAGAACAAGGTGGGTGTGTCGCTCTCGAAAGAGTTGATGAACGTGGCACGCGACGCGCTGAAAGTCCACATAACCTCCCTCGGCCCCCTCGTCCTCCCACTCTCGGAAAAGATAAAGTTCTTGTCAAACCTATTCGAGAGGAAGGTGCTGAAGACCAAGATCGAGTCCTACATGCCCAACTTCAAGCTTTCGTTCCAGCACTTCTGCATCCACACGGGAGGGAGGGCTGTGCTGGACCGCATGCAAAAGAGTTTGGAGCTCGAAGACTGGCACATGGAACCTTCTAGAATGACGCTGTACAGGTTCGGAAACACTTCTTCGAGCTCCGTGTGGTACGAGCTGGCGTATTGTGAGGCGAAGGGGAGGGTGAAGAAGGGTGATAGGGTGTGGCAGATGGCGTTTGGGTCGGGGTTCAAGTGCAACACTGCGGTCTGGCTTGCCTTGAACACCGTCGAAGCTGCGTCGTGCAGCAGCGCGTGGAGGGATGAGATTGCTAATTTTCCTGTCAAGATTGAACCTCTCCCCGTCAAGACTAAGAAATAA 1404 0.5342 MLHHFNMNILFTILLAVTTACFYVPELKHRGSIIVASCMAMAMLYHFLMNRPCKVYLVNFACFKPSVACLCSKETLLDRAKRVGFLSDENYKLVTKILDRSGLGPWTYVPEGLLAIPPKLTLDEARKETDTVLFGAVDELLAKTGIEAKDIGILVVNCCLFNPTPSLSDSIINRYKLRGNILAYNLSGMGCSAGVLAVDFAKQLLQAHPNSYALVLSTENEISSMYWGNNPSMLLVNCLFRMGGSAALLSSHPSDRSRAKYQLLHTLRTHVGADDNSYSCVFQEEDEENKVGVSLSKELMNVARDALKVHITSLGPLVLPLSEKIKFLSNLFERKVLKTKIESYMPNFKLSFQHFCIHTGGRAVLDRMQKSLELEDWHMEPSRMTLYRFGNTSSSSVWYELAYCEAKGRVKKGDRVWQMAFGSGFKCNTAVWLALNTVEAASCSSAWRDEIANFPVKIEPLPVKTKK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01220 467 PIRSF Very_long_ch_3-ktacl-CoA_syn 4 467 IPR012392 GO:0006633|GO:0016020|GO:0016747
Phco5g01220 467 CDD CHS_like 55 432 - -
Phco5g01220 467 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 352 432 IPR013747 -
Phco5g01220 467 SUPERFAMILY Thiolase-like 39 258 IPR016039 GO:0016746
Phco5g01220 467 Pfam FAE1/Type III polyketide synthase-like protein 48 336 IPR013601 GO:0006633|GO:0016020|GO:0016747
Phco5g01220 467 Gene3D - 111 433 IPR016039 GO:0016746
Phco5g01220 467 SUPERFAMILY Thiolase-like 264 432 IPR016039 GO:0016746
Phco5g01220 467 PANTHER 3-KETOACYL-COA SYNTHASE 33 457 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01220 Phco-Chr5 46101081 46106259 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01220 5 46101081 46106259 Phco5g01220 5 46101081 46106259 ECH