Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01180 ATGAATGCACTAGCAGCCACCAACAGGAACTTCAGGTTGGCCTCTAGGCTTCTGGGACTGGATTCCAAGCTTGAGAAAAGTTTGCTCATTCCATTCAGAGAAATCAAGGTTGAGTGTACCATCCCTAAAGATGATGGCACTTTGGCCACTTTTGTTGGGTTCAGGATTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCAGTGGCTAATATACCATATGGTGGGGCCAAAGGAGGGATAGGATGTGATCCTGCAGAATTAAGTGTGTCAGAGTTAGAGAGACTTACTAGAGTTTTCACTCAGAAAATTCATGATCTAATTGGAGTTCAGACAGATGTACCTGCACCTGATATGGGAACAGGACCACAGACTATGGCATGGATACTAGATGAGTATTCCAAATTTCATGGTCACTCTCCTGCAGTAGTTACTGGGAAACCTATTGATCTCGGTGGATCTCTAGGCAGAGATGCAGCCACGGGAAGGGGAGTCCTCTTTGCAACTGAGGCTTTGCTTAAGGAGCATGGGAAGAGTGTATCCGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCTTGGGCTGCCCAGTTGATCAGTGAGAAAGGTGGCATAGTTGTTGCTGTGAGTGACGTAACTGGGGCCATAAAGAATAGCAATGGTCTTGACATACCAAGCCTACTCAAGCATTCCAGAGAACACAGAGGAGTGAAAGGATTCCACGGTGGTGATGCTATTGATCCCAACTCAATATTGGTTGAAGACTGTGATGTCCTGGTCCCAGCAGCTCTTGGCGGAGTCATCAATAGGGAAAATGCCAACGAGATTAAAGCCAAATTTATTGTTGAAGCAGCCAATCACCCAACTGACCCTGATGCTGATGAGATTCTGAAAAAGAGAGGGGTTGTGATCCTGCCAGATATATTTGCAAATTCAGGAGGAGTGACAGTTAGCTACTTTGAGTGGGTGCAGAACATACAAGGATTCATGTGGGATGAGGAGAAGGTGAACAATGAATTAAGGACATACATGACCAAAGGGTTCAAAGATGTGAAGGAAATGTGCCAAACCCATAATTGTGATCTTCGTATGGGGGCATTCACCCTTGCAGTTAACCGTGTGGCAAGGGCCACTGTCCTTAGAGGTTGGGAAGCTTAA 1236 0.4571 MNALAATNRNFRLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLATFVGFRIQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPAELSVSELERLTRVFTQKIHDLIGVQTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLKEHGKSVSGQRFVIQGFGNVGSWAAQLISEKGGIVVAVSDVTGAIKNSNGLDIPSLLKHSREHRGVKGFHGGDAIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPDADEILKKRGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELRTYMTKGFKDVKEMCQTHNCDLRMGAFTLAVNRVARATVLRGWEA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01180 411 FunFam Glutamate dehydrogenase 33 175 - -
Phco5g01180 411 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 409 IPR036291 -
Phco5g01180 411 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 33 159 IPR006097 GO:0006520|GO:0016491
Phco5g01180 411 PANTHER GLUTAMATE DEHYDROGENASE 2 409 - -
Phco5g01180 411 FunFam Glutamate dehydrogenase 176 410 - -
Phco5g01180 411 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 6 178 IPR046346 -
Phco5g01180 411 Gene3D - 176 410 - -
Phco5g01180 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 167 189 IPR006095 GO:0006520|GO:0016491
Phco5g01180 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 88 102 IPR006095 GO:0006520|GO:0016491
Phco5g01180 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 336 347 IPR006095 GO:0006520|GO:0016491
Phco5g01180 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 209 229 IPR006095 GO:0006520|GO:0016491
Phco5g01180 411 ProSitePatterns Glu / Leu / Phe / Val dehydrogenases active site. 96 109 IPR033524 -
Phco5g01180 411 Gene3D Leucine Dehydrogenase, chain A, domain 1 33 175 - -
Phco5g01180 411 CDD NAD_bind_1_Glu_DH 176 402 IPR033922 GO:0016639
Phco5g01180 411 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 176 408 IPR006096 GO:0006520|GO:0016491
Phco5g01180 411 SMART ELFV_dehydrog_3 178 408 IPR006096 GO:0006520|GO:0016491
Phco5g01180 411 PIRSF Glu_DH 1 411 IPR014362 GO:0016639
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01180 Phco-Chr5 45162835 45166630 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01196 2 38035742 38038650 Phco5g01180 5 45162835 45166630 PCT