Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00873 ATGGACACATTTGTATGTGTAAAAGGAGCAACTGCAAACATCAGCATACTGGATTTATCAAATAATCAAATAACGGGACAACTTCCCGACTGTTGGGAACATCTAAGTTCACTGCAATTTCTTGATCTAAGCAATAATAATTGGTCTGAGAAGATTCCACAGTCCATGGGTGGTCTTGTTAATCTGGGAGCTTTGCTCTTGAGAAACAAGAGTTTAACAGGAGAGCTACCACTCACATTGAAAAACCACATTCATTTAGAGACATTGGACTTGAGCGAAAATTTGATTCGTGGTCTAATACCTTCATGGATTGGAGATAGTTTACAACAATTGAAAATGTTGAGCTTGAGGTCAAATCGCTTCTTTGGAAGTGTTCCTGTACATCTCTGTCAGTTGAGTCAAATTCTTGTCTTGGATCTTTCAAGGAACAACTTGTCAAAAGGAATTCCAACATGCTTGAGTAATTTTACAGCAATGATGGATAAAAAAGTTGTAAAAAGAGATGAAATCATAGAAGGTTCTTATCATTCTAATGTGTTATTGACGTGGAAAGGTCAGGAACACGTGTTTCTGAATCCCGAGTATCTTTTAAAGAGCATTGATCTCTCGAGTAATGATTTTACAGGTGAAATACCAAAAGAGGTTACAAAGTTACTTGGATTGGTTTCTTTGAATGTATCAAGAAATAATCTAGATGGAGAAATTCCTTCTGATATTGGGAATTTAAATTCACTAGAATTTCTTGACTTATCAAGAAATCATTTGTTTGGGAAAATTCCTTCTTCTCTCTCCAAAATTGATCGTCTTGCTGTGTTGAATTTATCGAACAATGATCTGAACGGAAGAATCCCTTGGGGAAGACAGTTGCAAACCTTTGATGCCTCTAGTTTTGGAGGAAATCTTGGTCTTTGTGGTGAGCAACTAAACAAAAGTTGCCCTGGAGACAATGCAACAGTAATGCCTCTAGGAACAGAAGTTGATGATGAAGATGAAAATTCAGTTTTCTATGAAGCATTATACATGAGCTTGGGGCTAGGATTCTTCATAGGCTTTTGGGGCTTATTAGAGACAATACTTCTTTGGAAACCATGGAGAATTGCTTATATGAGAGTCTTAAACATGCTGACAGACCATATACTTGTAGTGGTTGAATTGAATGTAGCCAAGTGCAATAGGTGGCTCAAAGGATAA 1191 0.3694 MDTFVCVKGATANISILDLSNNQITGQLPDCWEHLSSLQFLDLSNNNWSEKIPQSMGGLVNLGALLLRNKSLTGELPLTLKNHIHLETLDLSENLIRGLIPSWIGDSLQQLKMLSLRSNRFFGSVPVHLCQLSQILVLDLSRNNLSKGIPTCLSNFTAMMDKKVVKRDEIIEGSYHSNVLLTWKGQEHVFLNPEYLLKSIDLSSNDFTGEIPKEVTKLLGLVSLNVSRNNLDGEIPSDIGNLNSLEFLDLSRNHLFGKIPSSLSKIDRLAVLNLSNNDLNGRIPWGRQLQTFDASSFGGNLGLCGEQLNKSCPGDNATVMPLGTEVDDEDENSVFYEALYMSLGLGFFIGFWGLLETILLWKPWRIAYMRVLNMLTDHILVVVELNVAKCNRWLKG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00873 396 Pfam Leucine rich repeat 13 69 IPR001611 GO:0005515
Phco5g00873 396 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Phco5g00873 396 Pfam Leucine rich repeat 85 145 IPR001611 GO:0005515
Phco5g00873 396 Gene3D Ribonuclease Inhibitor 8 319 IPR032675 -
Phco5g00873 396 PANTHER OS10G0469600 PROTEIN 13 370 - -
Phco5g00873 396 SUPERFAMILY L domain-like 12 305 - -
Phco5g00873 396 FunFam Tyrosine-sulfated glycopeptide receptor 1 82 317 - -
Phco5g00873 396 PRINTS Leucine-rich repeat signature 14 27 - -
Phco5g00873 396 PRINTS Leucine-rich repeat signature 242 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00873 Phco-Chr5 12271885 12273075 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00873 5 12271885 12273075 Phco5g00873 5 12271885 12273075 ECH