Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00872 ATGGCTTGTTACTTTCTCGAAATATTGTTTGCAATATTAGTGCTCTTTTTACATACCCAATTACTGCCCATTCATGCATTCATCTCGTCATCACAAGTGAAGTGCATAGAGAGGGAGAGAGCTTCACTCCTCAACTTCAAACAAGGCCTCATAGATCATTCTGGCATGCTGTCAACATGGAGGGATGATAACATAGATTGCTGCAAATGGAGAGGCATTCAATGCAACAATGAAACAGGTGACGTACGAATTCTTGATCTTCGTGGTTCCAAAGTGCATTTTTTGACAGGTTCAATCAATCTTACTTCATTGATTGACTTAAAAAACATGGAATATTTGGATCTAAGCAATAATGATGATTCTGGTAGCACCCATCTCCCTCAGCACATGGGCTCTTTCAAAAAACTAAGATATCTCAATCTATCAAATGTGAATTTTTATGGGGAAATTCCTTATGAACTGGGAAATCTGTCAAAAATGGAGTATCTTGATCTTAAAGGAAATTCTCTCAGTGGAGCAATCCCTTCTCAACTAGGGAAACTTATAAGTTTACGATTTCTAGATCTAAGTGTCAATTATTATCTCCAAGGAGAAATCCCTTATCATCTCGGAAATCTCTCACATTTGAAGTATCTTAATCTTGGGTTTACATTACTGTCTGGAGCAATCACTTTCAAGGTTGGAAATCTTCCTCTCTTGCATACTCTCAGACTTGGTGGCAATTTTGATCTAACAATTAATGGTGCAAAGTGGTTATCTTCTCTCTCTTTGTTAACAACTCTTGGTCTCGATTCATTGACTAATCTTGCTTACTCTCATCACTGGCTACAAATAATTAGTGAGCTTATTCCAAACTTGAGAGAGTTGAATCTAGTCCGTTGTAGTCTTTCAGATAAGGATGTTTCATCTTTGTTTCCTTCTCATTCAAACCTTTCCACTTCTCTTTCCATCCTTGATCTCTCTGATAATATGTTGACATCATCAACATTTAAATTGTTGGTCAACCATAGCCATAACCTCCAAGCACTTCATTTTCGTGGGAATAACATTGTTTTGTCGTCACCTCATTATCCAAACTTTCCTTCTCTTGTTGTCCTTGATCTCGCTCTCAATAACCTGACATCATCAACAATTCTAGGAAATTTCAATTTCAGCTCCACACTACGAGAACTTTATCTAGAAGAGTGCAGTCTTACTGATACAAATTTTCTTGTTCCATCTGCTTTCGTAGGAAAGTCTTTAACTTCTCTTGTTACCCTTGATCTCTCCTCTAATCTATTGAAATCATCAACTGTATTTCATTTGATTTCCAACTTCACCACCTCTCTTCATACACTTTCCCTTGGAGGTAACTTGTTAGAAGGTCCCATCCCAGATGGATTCGGTATCGTAATGAACTCTCTTGAAGTTCTTTCCCTTTCCTCCAACAAACTGCATGGTCAGATCCCAGCTTCTCTTGGAAATATACGCTCATTACAGGAATTACTCCTTAGGAGTAACAACTTGAGTGGGAAAATTTCTAGCCTCATTAAAAAGTTTTCAATGTTGTCATCTTTAAGGATATTAGATCTTTCCAATAATAGGTTCACGGGAGAAATACCAAAAAGTATTGGGCTGCTGTATGAGTTGGAGACTCTTCACCTGCAGGAGAATAACTTGGAGGGTGATATCTATGAATTGCATTTCAAAAATTTGTCAAAATTGATCGATTTAGACTTAACACACAACTCGTTGTCGCTAAAGTTCGATACAACTTGGATTCCACCTTTCCAATTATTTAATTTGGGACTAGCTTCTTGCAAGTTGGGTCCTAGTTTTCCAAGTTGGCTCCAGACTCAATGTCGCTTAAGCTTTCTAGATATTTCTGATGCTGAGATTGATGACTATGTACCAGATTGGTTTTGGAACAAGTTACAATCTGTAAGTGATTTGAACATGTCTCACAACAGTATCAGAGGTACAATCCCGAATTTACCAATCAAGCTTACTGTACTGACCAGTCCTCGGACGTCAGCTGGGTCCCACATCATGGGCCAAAGCCACGTGGAATGGACCCCACAGGAGTATTGA 2070 0.3836 MACYFLEILFAILVLFLHTQLLPIHAFISSSQVKCIERERASLLNFKQGLIDHSGMLSTWRDDNIDCCKWRGIQCNNETGDVRILDLRGSKVHFLTGSINLTSLIDLKNMEYLDLSNNDDSGSTHLPQHMGSFKKLRYLNLSNVNFYGEIPYELGNLSKMEYLDLKGNSLSGAIPSQLGKLISLRFLDLSVNYYLQGEIPYHLGNLSHLKYLNLGFTLLSGAITFKVGNLPLLHTLRLGGNFDLTINGAKWLSSLSLLTTLGLDSLTNLAYSHHWLQIISELIPNLRELNLVRCSLSDKDVSSLFPSHSNLSTSLSILDLSDNMLTSSTFKLLVNHSHNLQALHFRGNNIVLSSPHYPNFPSLVVLDLALNNLTSSTILGNFNFSSTLRELYLEECSLTDTNFLVPSAFVGKSLTSLVTLDLSSNLLKSSTVFHLISNFTTSLHTLSLGGNLLEGPIPDGFGIVMNSLEVLSLSSNKLHGQIPASLGNIRSLQELLLRSNNLSGKISSLIKKFSMLSSLRILDLSNNRFTGEIPKSIGLLYELETLHLQENNLEGDIYELHFKNLSKLIDLDLTHNSLSLKFDTTWIPPFQLFNLGLASCKLGPSFPSWLQTQCRLSFLDISDAEIDDYVPDWFWNKLQSVSDLNMSHNSIRGTIPNLPIKLTVLTSPRTSAGSHIMGQSHVEWTPQEY 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00872 689 Pfam Leucine Rich Repeat 518 537 IPR001611 GO:0005515
Phco5g00872 689 SMART LRR_typ_2 157 181 IPR003591 -
Phco5g00872 689 SMART LRR_typ_2 465 489 IPR003591 -
Phco5g00872 689 SMART LRR_typ_2 360 381 IPR003591 -
Phco5g00872 689 SMART LRR_typ_2 516 540 IPR003591 -
Phco5g00872 689 SMART LRR_typ_2 414 435 IPR003591 -
Phco5g00872 689 FunFam Nuclear pore complex protein NUP107 36 195 - -
Phco5g00872 689 Gene3D Ribonuclease Inhibitor 35 196 IPR032675 -
Phco5g00872 689 Gene3D Ribonuclease Inhibitor 197 269 IPR032675 -
Phco5g00872 689 SUPERFAMILY L domain-like 55 434 - -
Phco5g00872 689 Gene3D Ribonuclease Inhibitor 513 671 IPR032675 -
Phco5g00872 689 SUPERFAMILY RNI-like 356 660 - -
Phco5g00872 689 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 415 675 - -
Phco5g00872 689 PANTHER LRR RECEPTOR-LIKE KINASE 290 508 - -
Phco5g00872 689 Gene3D Ribonuclease Inhibitor 270 512 IPR032675 -
Phco5g00872 689 ProSiteProfiles Leucine-rich repeat profile. 518 540 IPR001611 GO:0005515
Phco5g00872 689 PRINTS Leucine-rich repeat signature 516 529 - -
Phco5g00872 689 PRINTS Leucine-rich repeat signature 315 328 - -
Phco5g00872 689 Pfam Leucine rich repeat 442 502 IPR001611 GO:0005515
Phco5g00872 689 Pfam Leucine Rich repeat 284 305 IPR001611 GO:0005515
Phco5g00872 689 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00872 Phco-Chr5 12255156 12257225 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00872 5 12255156 12257225 Phco5g00872 5 12255156 12257225 ECH