Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00826 ATGCCCAAGCTATTTGCGTTAGCACAGGCCCACGCTATTTGCGTAGCCTACTGGCCAATGCTATTTACGTCGGTCACAGGCCCATGCTATTTGCGTCAGCTTAGCCCACGCAAAAGCGGTCGAATATGCGTCCGCTTCTGCGTCCATGCTCTTCTACGTGTTGCGTCCACTTTGCGTGGGTCAAGCCCACGCAACTTGCGTCCAACATTAAAACCCAAGCTAATTTTGATTTGCTTCCAAGGGTTTTTCGTCGGATGCTTGGCGGGCACAAAACAGACGCATAAGCGTCCGTTTTCCAACTTTTGCGTTGTTCATGGACAACACCAAATTAGATGCCTTCCAAAGGAGAGGGAAGCACTCCTCCAATTCAAGTCTGCTATTATTGATTCCTACGACATGCTTTCCTCTTGGTCTACTCCCAACTGTTGCCAGTGGGAGGGGATTTGCTGCAGCAACCTCACTACCCATATTCTAGGCCTCCACCTTCCTGGACAACATTATATTGAATATCATTATGAAGAAATCTCTAAACGTTATATCACTGGAGAGATCCACGAGTCATTGATGGAGTTGCGACAATTAGAACATAATTCTTTGGAAGGAGATGTATCTCAACTAGGAAATCTCTCCCAGTTGCAGGAGCTCTATCTTGGAGGATGTAATGATTTTAGAGGATGCTATGGTACTCTAAAAATTAACGAAGGAGGTCAGTGGCTCTCAAATCTCATTTCTTTAACTCATCTTTCCTTAAAACACATATCTAATTTTAACACTTCACCTAGCTACTTTCAAATGATTGCCAAGCTACCAAAACTAAGAGAACTGAGTTTAATTGATTGTGGCCTTTCCAATAATTTTCTTCTTTCATTCAAGCCTTCCAACTTCAATTTTTCTACTTCCCTTTCTGTCCTTGATCTTTCTCGCAACTCCTTTACACAAGCAATGATATTCAAGTGGGTGTCAAACACCACTTCCAACCTTGTTGAGTTTTACCTTTGGAGTAACCTCTTGGAGGGCTCCACATCAAATCATTATGGCTTGGCCATGAATTCGCTTCAACACCTTGACCTCTCCTATAATGTGTTCAAGGGTGAGGATTTGAAATCATTCATGAATACATGCACCCTATGTTTTTTAGACATGTCTGGAAACAAAATTGTCGAAGACCTTCCATCAATTCTTCGAGGTTTATCTAGTGGTTGTCTTAGATACTCACTTCAAGAGTTGCATTTGTCATACAATCAAATCACAGGATCCATACCTGACCTTTCAATATTCTCATCTTTAAAATCATTGGATCTTTCTGGCAATCAATTGAGTGGGAAGATACCTCAAGATACCAGATGGCCATCTCAATTGGAACATTTGTCAACTGGATCTAACTCTGTAAAAGAAAGTGTTCCAATGTCATTTGAGAGCACATGTAATTTGGAGTCATTGGATTTGTCTGATAATAAGTTGAATGAAGATTTGACTGTCGTATTTAATCATTTGTCCAGATGTTGTAGATATTCATTGCGAGAACTATATCTTGGTCGAAATAAATTCAACTGTGCACTTCCCGATTTCTCAATGTTTTTGAAGTTGGAAGTGCTAGATGTATTAAGGAATCAATTAAAGGATGGAGTTCCAAAGTCACTTCACAATGCTACTATTTTGCTTATATTGGACCTATCCAATAATAGTTTGAGTGAAAATCTTCCCACAATAATCCATCACTTATCCCAATATGTTCGATACTCATTGCAACATTTAGATTTGAGCCAGAATCAAATTACCGGCACTTTGCCTAACACCTTCACAATGTTCCCATCATTAAAAGGATTATACCTTAATAGTAATAAGCTAAATGGGACAATTTCTGAAGATCTTCGGTTTCCTACTCAACTTGAAGAACTATCTTTAATGTCAAACTCTTTGAAAGGTGTGATAAAGGACTCTCATTTTTCTAATATGTCAAAGTTAGAAACATTGGAGTTATTAGACAACTCAATAGTTTTGAAATTCAGTCAAAATAGGGCTCCATCATTTCAATTGGGTTATATTGGATTGAGATCTTGCAATGTTGGTCCATTATTTCCAAAATGGATACAGTCACAAAATAAAATTCGTTTCCTTGACATTTCAAATAATGGAATATCAAACACTCTTCCAATATGGTTTTGGGATAAATTTGAATTGCGAAACCCGATCAGCATCAACATTTCATACGACAATCTAGAAGGCATGATTCCAAATTTATCATTAGAGAATTCTTTTGATTCCTTTGATCTTGGTTCAAATCAATTTGAAGGTCCTATTCCATCATTTATACGAGATTCAACGTATATTGATCTGTCTAACAATAAATTCACAGATTCCTTTTGGTTTTTATGTTCTAGCGGTGAAATTGGATTGGGAGCAAATTACTAG 2412 0.3814 MPKLFALAQAHAICVAYWPMLFTSVTGPCYLRQLSPRKSGRICVRFCVHALLRVASTLRGSSPRNLRPTLKPKLILICFQGFFVGCLAGTKQTHKRPFSNFCVVHGQHQIRCLPKEREALLQFKSAIIDSYDMLSSWSTPNCCQWEGICCSNLTTHILGLHLPGQHYIEYHYEEISKRYITGEIHESLMELRQLEHNSLEGDVSQLGNLSQLQELYLGGCNDFRGCYGTLKINEGGQWLSNLISLTHLSLKHISNFNTSPSYFQMIAKLPKLRELSLIDCGLSNNFLLSFKPSNFNFSTSLSVLDLSRNSFTQAMIFKWVSNTTSNLVEFYLWSNLLEGSTSNHYGLAMNSLQHLDLSYNVFKGEDLKSFMNTCTLCFLDMSGNKIVEDLPSILRGLSSGCLRYSLQELHLSYNQITGSIPDLSIFSSLKSLDLSGNQLSGKIPQDTRWPSQLEHLSTGSNSVKESVPMSFESTCNLESLDLSDNKLNEDLTVVFNHLSRCCRYSLRELYLGRNKFNCALPDFSMFLKLEVLDVLRNQLKDGVPKSLHNATILLILDLSNNSLSENLPTIIHHLSQYVRYSLQHLDLSQNQITGTLPNTFTMFPSLKGLYLNSNKLNGTISEDLRFPTQLEELSLMSNSLKGVIKDSHFSNMSKLETLELLDNSIVLKFSQNRAPSFQLGYIGLRSCNVGPLFPKWIQSQNKIRFLDISNNGISNTLPIWFWDKFELRNPISINISYDNLEGMIPNLSLENSFDSFDLGSNQFEGPIPSFIRDSTYIDLSNNKFTDSFWFLCSSGEIGLGANY 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00826 803 Gene3D Ribonuclease Inhibitor 113 281 IPR032675 -
Phco5g00826 803 PRINTS Leucine-rich repeat signature 429 442 - -
Phco5g00826 803 PRINTS Leucine-rich repeat signature 474 487 - -
Phco5g00826 803 Gene3D Ribonuclease Inhibitor 282 398 IPR032675 -
Phco5g00826 803 SUPERFAMILY L domain-like 349 665 - -
Phco5g00826 803 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 581 785 - -
Phco5g00826 803 ProSiteProfiles Leucine-rich repeat profile. 428 450 IPR001611 GO:0005515
Phco5g00826 803 Pfam Leucine Rich repeats (2 copies) 405 440 IPR025875 -
Phco5g00826 803 Pfam Leucine Rich repeats (2 copies) 581 620 IPR025875 -
Phco5g00826 803 Pfam Leucine Rich repeat 350 370 IPR001611 GO:0005515
Phco5g00826 803 ProSiteProfiles Leucine-rich repeat profile. 581 603 IPR001611 GO:0005515
Phco5g00826 803 Gene3D Ribonuclease Inhibitor 399 448 IPR032675 -
Phco5g00826 803 Gene3D Ribonuclease Inhibitor 449 794 IPR032675 -
Phco5g00826 803 Pfam Leucine rich repeat N-terminal domain 115 151 IPR013210 -
Phco5g00826 803 SUPERFAMILY RNI-like 160 466 - -
Phco5g00826 803 SUPERFAMILY L domain-like 614 786 - -
Phco5g00826 803 ProSiteProfiles Leucine-rich repeat profile. 405 427 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00826 Phco-Chr5 10155178 10158349 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00826 5 10155178 10158349 Phco5g00826 5 10155178 10158349 ECH