Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00823 ATGATTGTCAAGCTACCAAAACTAAGAGAACTGAGTTTAATTGATTGTGGCCTTTCCAATCATTTTCTCCATTCATTCAAGCCTTCCAATTTCAATTTTTCTACTTCCCTTTCTGTCCTTCATCTTTCTCTGAACTCCTTCACACAAGCAACGATATTCCAGTGGGTGTCGAACACCACTTCCAACCTTGTTGAACTTGACCTTTCGAGTAACCTCTTGGAGGGCTCCACATCAAATCATTTTGGCTTGGCCATGAATTCGCTTCAACACCTTGACCTCTCCAATAATGTTTTCAAGGGCGAGAATTTGAAATCATTCATAAATATATGCACCATGTGTTCTTTATACATGACTAAAAACAATATTGCGGAAGACCTTCCGTCAATTCTTCAAGGTTTGTCTAGTGGTTGTCTTAGATACTCACTGCAAGAGTTGTATTTGTCATACAATCAAATCACGGGATACATACCTGACCTTTCAATGTTCTCATCCTTAAAATCATTGGATCTTTCTAGCAATCAATTGAGTGGGAAGATACCTCAAGACACCAGATGGCCATCTCAGTTGGAACATTTGTCAACTGGATCTAAATCTTTAGAAGACAGTGTTCCAATGTCATTTGAGAGCACATGTAATTTGGAGTCATTGGATTTGTCTGATAATAAGTTGAATGAAGATTTGACTGTCGTATTTAATCATTTGTCTAGATGTTGTAGATATTCATTGCGAGAACTATATCTTGGTCGAAATGAATTCAACAGTGCACTTCCTGATTTCTCAATGTTTTCGAAGTTGGAAATACTAGATGTATCAGGGAATCAATTAAAGGATGGAGTTCCAAAGTCACTTCACAATGCTACTATTTTGCGTATATTGGACCTATCCAGTAATAGTTTGAGTAATAGTTTGAGTGAAAATCTTCCCACAATAATCCATCACTTATCCCAATATGTTCGATACTCATTGCAACGTTTACATCTGAGCCACAATCAAATTACCGGCACTTTGCCTAACACCCTCACAATGTTCCCATCATTAAAAGAATTATACCTTGGTGGAAATAAGCTAAATGGGACAATTTCTGAAGATCTTCGGTTTCCTACTCAACTTGAAGCACTATATTTAATGTCAAACTCTTTGAAAGGTGTGATAAAGGACTCTCATTTTTCTAATATGTCAAATTTAGAATCATTGGACTTATCAGATAACTCATTAGTGTTGAAATTTAGTCGAAATTGGGCTCCATCCTTTCAATTGGGTCATATTGGATTGAGATCTTGCAAGGTTGGTCCATTATTTCCAAAATGGATACAGTCTCAAAACAAAATTAACACCCTTGACATTTCAAATAATGGAATATCAGACACTCTTCCAAAATGGTTTTGGGATAAATTTGACTTGCAAGACTATATCAGTATCGACATTTCATGCAACAATCTACAAGGCATGATTCCTAATATGTCATTAGATAACCGATTTTTTTACCTTAATTTTGGATCAAATCAATTTGAAGGTCCTATTCCATTATTTTTACGAGATTCAGGGCATCTAGATTTGTCTAACAATAAATTGACAGATTTTTTTTGGTTTTTATGTTCTGGTGGTATAGTTGGAACTTTATATCAACTAGACCTTTCAAATAATAAGTTGTCTGGAAAAATTCCAGATTGTTGGACCCATTTCAAATCATTGGTTTATTTAAACATGAGTCAGAATATATTTTCTGGAAAAATTCCTGCTTCATTGGGGTCACTCCTTGAACTTCAAGTATTATTATTGAGAAACAATAACTTAACAGGTGAATTCTCTTCTTCCTTGAGAAACTGCACTAAGTTGGTGATGCTGGATATGACAGAAAATAAATTATCAGGATCTATTCCAAATTGGATTGGGAGCAAATTGCTACAGTTACAAGTTTTAAGCTTGGGAAATAATTCATTCAATGGGAGTTTACCTTTGCAAATTTGTTATCTAAAAAGCATTAAGCTCTTGGATCTCTCACTAAACAACCTATCTGGACAAATTCCTCAATGCATAAAAAACTTCTCCTCACTGACTCAAGTGACTTCTTTGAGAGATTATGAAGGTCATTGGTATTGGGCCAACACAAGCTATATCAAAACTATAGTTTCATACAATTTGAATGCATTCTTGATGTGGAAAGGATCAAAGCAAATGTTCAAAAATAATGGATTATCACCTTTAAAAAGCATTGATCTCTCAAGCAATCAATTATCGGGAGAAATCCCAAAAGAAATAGAGTCTTTTTGGATTGATTTCATTGAATTTATCAAGAAATCATTTGACGGGGAAAATTCCTTCAAATATTGGAAAGTTAACCTCACTTGA 2349 0.3474 MIVKLPKLRELSLIDCGLSNHFLHSFKPSNFNFSTSLSVLHLSLNSFTQATIFQWVSNTTSNLVELDLSSNLLEGSTSNHFGLAMNSLQHLDLSNNVFKGENLKSFINICTMCSLYMTKNNIAEDLPSILQGLSSGCLRYSLQELYLSYNQITGYIPDLSMFSSLKSLDLSSNQLSGKIPQDTRWPSQLEHLSTGSKSLEDSVPMSFESTCNLESLDLSDNKLNEDLTVVFNHLSRCCRYSLRELYLGRNEFNSALPDFSMFSKLEILDVSGNQLKDGVPKSLHNATILRILDLSSNSLSNSLSENLPTIIHHLSQYVRYSLQRLHLSHNQITGTLPNTLTMFPSLKELYLGGNKLNGTISEDLRFPTQLEALYLMSNSLKGVIKDSHFSNMSNLESLDLSDNSLVLKFSRNWAPSFQLGHIGLRSCKVGPLFPKWIQSQNKINTLDISNNGISDTLPKWFWDKFDLQDYISIDISCNNLQGMIPNMSLDNRFFYLNFGSNQFEGPIPLFLRDSGHLDLSNNKLTDFFWFLCSGGIVGTLYQLDLSNNKLSGKIPDCWTHFKSLVYLNMSQNIFSGKIPASLGSLLELQVLLLRNNNLTGEFSSSLRNCTKLVMLDMTENKLSGSIPNWIGSKLLQLQVLSLGNNSFNGSLPLQICYLKSIKLLDLSLNNLSGQIPQCIKNFSSLTQVTSLRDYEGHWYWANTSYIKTIVSYNLNAFLMWKGSKQMFKNNGLSPLKSIDLSSNQLSGEIPKEIESFWIDFIEFIKKSFDGENSFKYWKVNLT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00823 782 PRINTS Leucine-rich repeat signature 165 178 - -
Phco5g00823 782 PRINTS Leucine-rich repeat signature 392 405 - -
Phco5g00823 782 SUPERFAMILY RNI-like 4 131 - -
Phco5g00823 782 SMART LRR_sd22_2 286 309 - -
Phco5g00823 782 SMART LRR_sd22_2 732 755 - -
Phco5g00823 782 SMART LRR_sd22_2 85 105 - -
Phco5g00823 782 SMART LRR_sd22_2 262 283 - -
Phco5g00823 782 SMART LRR_sd22_2 658 684 - -
Phco5g00823 782 SMART LRR_sd22_2 210 229 - -
Phco5g00823 782 SMART LRR_sd22_2 343 366 - -
Phco5g00823 782 SMART LRR_sd22_2 367 394 - -
Phco5g00823 782 SMART LRR_sd22_2 162 194 - -
Phco5g00823 782 SMART LRR_sd22_2 60 75 - -
Phco5g00823 782 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 535 626 - -
Phco5g00823 782 Pfam Leucine Rich Repeat 264 285 IPR001611 GO:0005515
Phco5g00823 782 Pfam Leucine Rich Repeat 62 81 IPR001611 GO:0005515
Phco5g00823 782 SUPERFAMILY RNI-like 144 681 - -
Phco5g00823 782 Gene3D Ribonuclease Inhibitor 304 489 IPR032675 -
Phco5g00823 782 SMART LRR_typ_2 343 367 IPR003591 -
Phco5g00823 782 SMART LRR_typ_2 392 419 IPR003591 -
Phco5g00823 782 SMART LRR_typ_2 162 186 IPR003591 -
Phco5g00823 782 SMART LRR_typ_2 210 233 IPR003591 -
Phco5g00823 782 SMART LRR_typ_2 85 110 IPR003591 -
Phco5g00823 782 SMART LRR_typ_2 262 285 IPR003591 -
Phco5g00823 782 SMART LRR_typ_2 320 342 IPR003591 -
Phco5g00823 782 SMART LRR_typ_2 634 658 IPR003591 -
Phco5g00823 782 SMART LRR_typ_2 732 756 IPR003591 -
Phco5g00823 782 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 388 484 - -
Phco5g00823 782 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Phco5g00823 782 Gene3D Ribonuclease Inhibitor 1 303 IPR032675 -
Phco5g00823 782 Gene3D Ribonuclease Inhibitor 490 764 IPR032675 -
Phco5g00823 782 ProSiteProfiles Leucine-rich repeat profile. 141 163 IPR001611 GO:0005515
Phco5g00823 782 SUPERFAMILY L domain-like 315 525 - -
Phco5g00823 782 PANTHER LRR RECEPTOR-LIKE KINASE 18 224 - -
Phco5g00823 782 Pfam Leucine Rich repeats (2 copies) 321 360 IPR025875 -
Phco5g00823 782 Pfam Leucine Rich repeats (2 copies) 141 177 IPR025875 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00823 Phco-Chr5 10099490 10101838 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00823 5 10099490 10101838 Phco5g00823 5 10099490 10101838 ECH