Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco5g00742 | ATGGATCCCAATATTGATGATAAGAGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTTAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCAAAACGCGGGGAGCCACGTGGTTTTGCTTTTATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTCGCCTGCGGCCGGCCGCTGGTTGTTCGTCTTGCCGGTGAGAAGTGCTTGTTGGAAACAGCTGATAAGTCTACAAAAACAGCAAGTGAAGGGCAGAAGATGCTTCTCATTGGTGGTGGTGGTGCCATGGGACAGACAAGTCGTACCGCAAAAATAGCTGCTATAAAAAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAGATGACAACATTTCTTGA | 474 | 0.4367 | MDPNIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKTASEGQKMLLIGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKKQKQDDNIS | 157 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco5g00742 | 157 | CDD | RRM_RBM18 | 12 | 90 | IPR039157 | - | |
| Phco5g00742 | 157 | MobiDBLite | consensus disorder prediction | 138 | 157 | - | - | |
| Phco5g00742 | 157 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 94 | IPR035979 | GO:0003676 | |
| Phco5g00742 | 157 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 7 | 94 | - | - | |
| Phco5g00742 | 157 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 13 | 85 | IPR000504 | GO:0003723 | |
| Phco5g00742 | 157 | Coils | Coil | 130 | 150 | - | - | |
| Phco5g00742 | 157 | SMART | rrm1_1 | 12 | 88 | IPR000504 | GO:0003723 | |
| Phco5g00742 | 157 | Gene3D | - | 8 | 101 | IPR012677 | - | |
| Phco5g00742 | 157 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 11 | 92 | IPR000504 | GO:0003723 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco5g00742 | 5 | 8348487 | 8349623 | Phco5g00742 | 5 | 8348487 | 8349623 | ECH |