Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00616 ATGGCTTCTGCAACACTCTCTCTGCATTACCCACTTCTTCTTCTTCGTTCTCCTCTTTCTACCAAAATTACCAAACCACCCCTCTCACCCCGACCCCTTCTTCTCCCTCACCCTCTCCACTCGCGGTTCCTCCTCCCTCCGCCACGCGCCTACGTCACCGCGCCCGCATCCGACCACAATTTTGGAGACCCGGATCCGAAGCTGGTTGGGTTGGGTTCAGAGAACGCGAAGCCGCAAAACGTGATCACGTGGAGCCTCCTCTGCACGCTTCTCATGAACCACAAACTGCGCCTGGCTCTCATGGTCGCAACGCTCTTCGCCTGCTCCACCTGTACCCTATCCATGCCCCTCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGAGCTAGACCTGAACCGTTATGGAAGCTACTTACTAAAATTGGAGTTCTGTATGCCATGGAGCCACTTTTAACTATTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAATTATGTCAACACTAAGAGCTCAGATCTTCGGAAGAATATTGATTCAAAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTCAGCGAGAATGTCTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCATTGGAACAATATTCATTCTCTTTTCTTTAGCACCGCAACTGGCACCCATTCTAGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCTACATTGCCAGTTTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGACTGTGTAACTGAAACGTTTTCAGCTATTAGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCTCTTTTGCTAATCAGGTTCTGTCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATAGCATTATATTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATCGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGTGGAAGTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTTTCTGGAGTTCAAGTTGATGATGCCCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAACAGTGGATGATGAAAACTATAAATTGGTCTTATCTAATATTTCTACTGAGAATAGCCAAAAAAATTATTTTCACTATATGTCAGCTCTCAAAACTTCAAGCAATTTATTTAGCTTAGCTTGGTCCGGAGATATTTGTCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCGGATGTGGAAATCTTACATGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTAGTGGGTCCAAGTGGTGCAGGAAAAAGTACAGTAGTCCAGCTATTGTCTCGATTTTATGAGCCAATAAGTGGCTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCAGGTTGTGTCTATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTCTCTAAAGAAGATATCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATTGCTATTGCCCGTGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTCAGTGAACGCTTGGTCCAGGATGCTCTCAACCAGTTGATGAAGGGAAGGACCACTTTAGTAATAGCCCACCGATTAAGCACAGTGCAAAATGCATATCAAATTGCAGTCTGTTCTGAGGGCAGGATTGCAGAATTAGGCAGTCATTTTGAGCTATTGGCCAAGAAGGGCCAATATGCTTCACTGGTTGGCACACAAAGGCTTGCCTTTGAATAA 2112 0.429 MASATLSLHYPLLLLRSPLSTKITKPPLSPRPLLLPHPLHSRFLLPPPRAYVTAPASDHNFGDPDPKLVGLGSENAKPQNVITWSLLCTLLMNHKLRLALMVATLFACSTCTLSMPLFSGRFFEVLIGARPEPLWKLLTKIGVLYAMEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEVIGTIFILFSLAPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGKAQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSFAAVERINSVFSGVQVDDALAYGLERELRQKTVDDENYKLVLSNISTENSQKNYFHYMSALKTSSNLFSLAWSGDICLEDVYFSYPLRPDVEILHGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPISGCITVAGEDVRTFDKSEWAQVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNQLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIAELGSHFELLAKKGQYASLVGTQRLAFE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00616 703 Gene3D ABC transporter type 1, transmembrane domain 71 395 IPR036640 GO:0005524|GO:0016020
Phco5g00616 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 459 697 IPR003439 GO:0005524
Phco5g00616 703 Gene3D - 457 700 IPR027417 -
Phco5g00616 703 SUPERFAMILY ABC transporter transmembrane region 87 394 IPR036640 GO:0005524|GO:0016020
Phco5g00616 703 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco5g00616 703 Pfam ABC transporter transmembrane region 100 369 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco5g00616 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 698 IPR027417 -
Phco5g00616 703 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 457 701 - -
Phco5g00616 703 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 67 701 IPR039421 -
Phco5g00616 703 SMART AAA_5 486 681 IPR003593 GO:0016887
Phco5g00616 703 FunFam ABC transporter B family member 28 75 398 - -
Phco5g00616 703 Pfam ABC transporter 477 628 IPR003439 GO:0005524
Phco5g00616 703 ProSitePatterns ABC transporters family signature. 600 614 IPR017871 GO:0005524|GO:0016887
Phco5g00616 703 CDD ABC_6TM_TAP_ABCB8_10_like 105 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00616 Phco-Chr5 6062863 6073136 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00616 5 6062863 6073136 Phco5g00616 5 6062863 6073136 ECH