Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00606 ATGGCCTCTTCACACCCTACCAATGTGGGAATCCTTGCCATGGACATCTACTTCCCTCCTAGCTGCGTCACCCAGGAAGCTTTGGAGGGTCATGATGGAGTGAGCAAAGGGAAATACACTATTGGGCTTGGACAGTATTGCATGGCCTTCTGCTCTGAGGTTGAAGATGTTATCTCAATGAGCTTGACAGTAGTTGCTTCACTTCTTGAAAAATTTAATGTTGATCCAAAGCAGATTGGACGCTTGGAGGTTGGGAGTGAAACTGTCATTGATAAAAGCAAATCCATTAAGACCTTTCTGATGCAAGTTTTTGAGGCGAGTGGTAATACTGACATCGAAGGTGTTGATTCAACAAATGCGTGCTATGGAGGAACAGCGGCTTTGTTCAACTGTGTGAATTGGGTGGAGAGTAGTTCATGGGATGGACGTTATGGACTTGTTGTATGTACAGACAGTGCGGTATATGCAGAAGGACCTGCTCGTCCCACTGGAGGAGCAGCTGCAATTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTATCGACTTTTTTGTGAGAAATTTGAAAAATTGGAGGGGAGGCCTTTTTCAATATCAGATTCTGATTATTTTGTGTTTCATTCTCCATATAACAAGCTTGTGCAGAAAAGTTTTGGCCGGCTATACTTTAATGACTTCATGAGAAATATCAGTTTCGTTGATGAAGCTGCCAGGGAAAGCCTTGCACCGTATGCTTCCTTATCTAATGATGAGAGTTATCAAAGTCGTGATCTTGAAAAGGCAAACCAACAAGCTGCCAAACATGTATATGATGCAAAAGTGCAGCCCAGCACACTAATCCCAAAGCAAGTTGGTAACATGTACACTGCATCTCTTTATGCAGCATTTGCATCTCTTCTTCATAATAAAAACACTTCCTTGGTGGGTAAACGGGTGGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACAATGTTCTCTGTCCACCTTCAAGAAGGTCAGCATCCGTTTAGCTTGTCAAACATTGTAACCGTGATGAATGTTTCGGACAAGTTGAAGCAGAGACTTGAGATTCCTCCTGAAAAGTTTGTTGAAACATTGAAGATCATGGAGCACCGTTATGGGGGTAAGGACTTTGTGACAAGCAAGGACTGCAGCTGCTTGCCTCCAGGCACCTTCTATCTCACCAATGTTGATTCTATGTACAGGAGATATTATGCCAAGAAGGACAAGGTGATTGGTTAG 1377 0.4277 MASSHPTNVGILAMDIYFPPSCVTQEALEGHDGVSKGKYTIGLGQYCMAFCSEVEDVISMSLTVVASLLEKFNVDPKQIGRLEVGSETVIDKSKSIKTFLMQVFEASGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYRLFCEKFEKLEGRPFSISDSDYFVFHSPYNKLVQKSFGRLYFNDFMRNISFVDEAARESLAPYASLSNDESYQSRDLEKANQQAAKHVYDAKVQPSTLIPKQVGNMYTASLYAAFASLLHNKNTSLVGKRVVMFSYGSGLTATMFSVHLQEGQHPFSLSNIVTVMNVSDKLKQRLEIPPEKFVETLKIMEHRYGGKDFVTSKDCSCLPPGTFYLTNVDSMYRRYYAKKDKVIG 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00606 458 SUPERFAMILY Thiolase-like 179 451 IPR016039 GO:0016746
Phco5g00606 458 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Phco5g00606 458 Gene3D - 2 454 IPR016039 GO:0016746
Phco5g00606 458 CDD init_cond_enzymes 8 372 - -
Phco5g00606 458 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 4 454 - -
Phco5g00606 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Phco5g00606 458 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 453 - -
Phco5g00606 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 6 178 IPR013528 -
Phco5g00606 458 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Phco5g00606 458 NCBIfam hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00606 Phco-Chr5 5902367 5908712 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00606 5 5902367 5908712 Phco5g00606 5 5902367 5908712 ECH