Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00564 ATGGCTTGCATCCCCACACTTTCTCCATCCCTACACACACTCTCCCCTCACTCCTCACTCCATTCTAACTCCAACCACTGCACTCTCCCTCCCACCTCTCTCTTCGGCACCAGGATCACCCTCCTACGCGCCACCTCATCATCCCGTTCCCTCCCCTATGTCAATGGCCATGCCACTTCAGCAACGGTTTCGTTTAGCCTCCCCACCCCGAAAACCCCCGGTGCTGCGCCAGAGAAAACCCCAAAGTGGTCGGCGAGGGCTATAAAATCGTATGCAATGGCGGAATTGGAGGCGAGGAAGATAAAGTTTCCCAACACGGGAACCGAGGCTCTTCTGATGGGGATTTTGGTTGAAGGAACAAGTAGAGCTGCTAAATTCTTAAGAGCTAATGGAATTACTCTTTTCAAAGTACGTGAAGAAACTTTAAATCTACTTGGGAAGTCTGACTTGTATTACTTCAGCCCTGAACATCCTCCTTTGACCAAACCAGCCAAGTCAGCCCTTGATTGGGCTATTGAGGAGAAACTGAAATCAGGTGAAGGAGGAGAAATGAACGTGACACATATACTTCTAGGAATTTGGTCACAAAAAGAATCAGCAGGTCAATTGATTTTGGCTGATCTAGGTTTCAATGATGAAAAAGCCAAAGAACTTGCTAAAACAATTGATGGAGATGTTGATTTGAGTTTCAAAAGCCAAACTTAA 705 0.4667 MACIPTLSPSLHTLSPHSSLHSNSNHCTLPPTSLFGTRITLLRATSSSRSLPYVNGHATSATVSFSLPTPKTPGAAPEKTPKWSARAIKSYAMAELEARKIKFPNTGTEALLMGILVEGTSRAAKFLRANGITLFKVREETLNLLGKSDLYYFSPEHPPLTKPAKSALDWAIEEKLKSGEGGEMNVTHILLGIWSQKESAGQLILADLGFNDEKAKELAKTIDGDVDLSFKSQT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00564 234 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 7 230 IPR044217 -
Phco5g00564 234 Pfam Clp amino terminal domain, pathogenicity island component 104 146 IPR004176 -
Phco5g00564 234 Pfam Clp amino terminal domain, pathogenicity island component 186 220 IPR004176 -
Phco5g00564 234 SUPERFAMILY Double Clp-N motif 82 224 IPR036628 -
Phco5g00564 234 Gene3D - 82 229 IPR036628 -
Phco5g00564 234 ProSiteProfiles Clp repeat (R) domain profile. 77 225 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00564 Phco-Chr5 5286771 5290788 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00564 5 5286771 5290788 Phco5g00564 5 5286771 5290788 ECH