Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00411 ATGGCTAACATGGTTTTTGTTGGTGTCAACGTTGCTGCTGTTTCTCTACCACCATTACCCACTACAAGCAAAAATCTCACTTTCAGTTTCACCCATAAGAAACACTTCCTTCTTCTGAATTGCTCCCAAACCAATAACAGAACAACCTCTTTCTCTTCTTCCTTCTCATTCTCATCATCACACCTCACAAACAAGGGTGGTTGTTGTGTGTTGGGTTGTCTCCCTCCAGCTTCGTCTGAATCCTCAACGTCATCATCTTCCACAGCTAAGCCCTCTTCCCCTTTCCCTTCAACTAAGCTTTATGTCAGTGGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAATTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTCGCTTTTCTTCGTTATGCAACTGAAGAAGAATCTCAGAAAGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTACCACAGCGGCACAGGGAAGGCACAAGATTGTAA 573 0.4328 MANMVFVGVNVAAVSLPPLPTTSKNLTFSFTHKKHFLLLNCSQTNNRTTSFSSSFSFSSSHLTNKGGCCVLGCLPPASSESSTSSSSTAKPSSPFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQRHREGTRL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00411 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Phco5g00411 190 PANTHER NUCLEOLAR PROTEIN 8 84 185 - -
Phco5g00411 190 Gene3D - 76 189 IPR012677 -
Phco5g00411 190 SMART rrm1_1 99 172 IPR000504 GO:0003723
Phco5g00411 190 FunFam Organelle RRM domain-containing protein 6, chloroplastic 82 189 - -
Phco5g00411 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Phco5g00411 190 SUPERFAMILY RNA-binding domain, RBD 88 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00411 Phco-Chr5 3735154 3737725 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00411 5 3735154 3737725 Phco5g00411 5 3735154 3737725 ECH