Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00286 ATGCCTGTTGTGACAGAACACATGAAGTGGAGAAGACCAAGAAACCAATTCAGATGCCCCATTTCAGACAATGATCCAAATCCTCAAAATCCTTCAACAATCCAATCCTCTCACACCAAATCCACTATCTCGGCTCTCTTATCTTCATTCTCCACCTCTAATGAAACCACACATGTCAGAGACCAAAACAGCAACAAAAACAACAGAAAATTCTCTACAGCAACCTTTAGAGGACTCGGTTGCACTGTCAGAGCATCCCAGAAGGTTTCGGTGCCCACTGTGATTCGGTCCTCGGCGGATTGGGAAGGGAAGAGGAACAGGAAGAAGAAGCACAGGAGGAACAGTGACAGTGACAGTAACAAGACATGTGATGGGGTTGTTCATGATGTTTCTGGTGGAACATGTGTGGATTTTCAGGATGTTTGGTGTGGTCCTGGAATTGGGTTCTCAACAGATGCTTCTGCTGCTGCTTCATCTGTGGACTGTGTTGTGGCTAGGAGGAATGTGTCTGCAAGAGGAAAACTTGATGTGGTGGAGAGGGAGCGTTCATCTTACTTTGGAAGGCGCACTGTAAGGCCAGAAAAGTTCTCTTTTCTAGATGATGAATCTGATGTCTTCACAGCACGTAGTGGGCTAGACCCTTTTGGAACTGCTAGATTCTATCGTCATGTTCCACATCCTTCTCCTGATGGTCTTGCTGAGATAATGATAATCAGAGGAAGAAGAATAATAATGGGGGGTCGACTAAACTCACACGACCAATTTAGGGACTGGAGACTTGATATTGATGACATGTCATACGAGGAATTGCTTGAGCTGGGTGAGAGAATAGGTCATGTCAGCACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGAAAAGTTAAACTTTCAAGCTCAAATGATGCATCAAAGGATCAAGAAGGCAAAAACTGCAGTGTTTGTCAGGAGGAGTATGAACCACATGATGAGTTGGGGAAATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAGTGGCTTGTGCAAAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTGGTTCGACCCTAA 1086 0.4411 MPVVTEHMKWRRPRNQFRCPISDNDPNPQNPSTIQSSHTKSTISALLSSFSTSNETTHVRDQNSNKNNRKFSTATFRGLGCTVRASQKVSVPTVIRSSADWEGKRNRKKKHRRNSDSDSNKTCDGVVHDVSGGTCVDFQDVWCGPGIGFSTDASAAASSVDCVVARRNVSARGKLDVVERERSSYFGRRTVRPEKFSFLDDESDVFTARSGLDPFGTARFYRHVPHPSPDGLAEIMIIRGRRIIMGGRLNSHDQFRDWRLDIDDMSYEELLELGERIGHVSTGLKEDEMGHNIRKVKLSSSNDASKDQEGKNCSVCQEEYEPHDELGKLKCDHSYHFQCIKQWLVQKNFCPVCKQEVVVRP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00286 361 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Phco5g00286 361 FunFam E3 ubiquitin-protein ligase rnf12-A 280 359 - -
Phco5g00286 361 SUPERFAMILY RING/U-box 306 359 - -
Phco5g00286 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 359 IPR013083 -
Phco5g00286 361 Pfam Ring finger domain 312 354 IPR001841 -
Phco5g00286 361 MobiDBLite consensus disorder prediction 1 41 - -
Phco5g00286 361 MobiDBLite consensus disorder prediction 20 41 - -
Phco5g00286 361 SMART ring_2 313 353 IPR001841 -
Phco5g00286 361 MobiDBLite consensus disorder prediction 92 122 - -
Phco5g00286 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 26 357 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00286 Phco-Chr5 2367990 2373087 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00286 5 2367990 2373087 Phco5g00286 5 2367990 2373087 ECH