Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00213 ATGAAGGAGAATGATTTGGTTGAACACTTCATTCCTCTAGTTAAGAGGCTGGCTGCCGGTGAGTGGTTCACAGCACGAGTTTCATCGTGCGGTTTGTTCCATATTGCTTACCCTAGTGCACCGGAGGTGGTGAAGAGTGAACTGAGAGCCATATATGGTCAGCTATGTCAAGATGATATGCCCATGGTTAGGAGATCTGCTGCCACAAACTTGGGAAAGTTTGCTGCCACTGTTGAAGCTCCTCACTTGAAATCAGACGTCATGTCTGTGTTTGAGGATCTTACACAGGATGATCAAGATTCTGTTCGGCTGCTTGCAGTTGAGGGTTGTGCAGCTCTAGGAAAATTGTTGGAGCCTCAGGATTGTGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGGACAAGTCATGGCGTGTTCGTTACATGGTTGCAAATCAACTATATGAGTTATGTGAAGCTGTTGGTCCTGATCCCACTAGGTCAGAATTGGTTCCTGCCTATGTTAGGCTGCTGCGTGACAATGAGGCTGAAGTACGTATCGCTGCTGCTGGGAAAGTAACTAAGTTCTCCCGCATACTAAATCCTGAACTTGCCATTCAGCATATTCTACCCTGTGTGAAGGAGCTATCAAGCGATTCATCTCAACATGTTCGCTCTGCATTGGCTTCCGTTATAATGGGAATGGCACCAGTGTTGGGGAAGGATGCAACAATTGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGATGAATTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAATCAGGTTATTGGTATCGATTTGTTATCTCAGTCTCTGTTGCCAGCTATAGTTGAGCTTGCTGAGGATCGGCACTGGAGAGTTCGACTTGCTATCATAGAATATATACCCTTACTGGCCAGCCAATTGGGTGTAGGCTTTTTTGATGATAAGCTCGGTGCTCTTTGCATGCAATGGCTAAAGGACAAGGTATACTCAATCCGTGACGCGGCCGCAAATAATATCAAACGCTTAGCAGAAGAATTTGGACCAGATTGGGCAATGCAACACATTATTCCCCAGGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGGATGACGATCCTTCAAGCAATTTCTCTACTGGCTCCTGTTTTGGGCTCGGAGATTACTTCTTCAAAACTTCTCCCTCTGGTCATTAATGCATCAAAAGATAGGGTACCCAATATCAAATTTAATGTAGCCAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCTGTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTGAGTGAGGATCCAGATGTTGATGTTAGGTTTTTTGCCTCTCAAGCACTACAATCTAGTGATCAAGTCAAGATGTCTAGCTAG 1416 0.4428 MKENDLVEHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEVVKSELRAIYGQLCQDDMPMVRRSAATNLGKFAATVEAPHLKSDVMSVFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRSELVPAYVRLLRDNEAEVRIAAAGKVTKFSRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNIKRLAEEFGPDWAMQHIIPQVLDMVTDPHYLYRMTILQAISLLAPVLGSEITSSKLLPLVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVESTIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 165 203 IPR021133 -
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 282 320 IPR021133 -
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 126 164 IPR021133 -
Phco5g00213 471 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 1 465 - -
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 243 281 IPR021133 -
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 438 471 IPR021133 -
Phco5g00213 471 Pfam HEAT repeat 126 154 IPR000357 GO:0005515
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 204 242 IPR021133 -
Phco5g00213 471 Gene3D - 1 463 IPR011989 -
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 399 437 IPR021133 -
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 360 398 IPR021133 -
Phco5g00213 471 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 3 469 - -
Phco5g00213 471 SUPERFAMILY ARM repeat 3 463 IPR016024 -
Phco5g00213 471 Pfam HEAT repeats 245 344 - -
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 87 125 IPR021133 -
Phco5g00213 471 ProSiteProfiles HEAT repeat profile. 48 86 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00213 Phco-Chr5 1748243 1756533 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00213 5 1748243 1756533 Phco5g00213 5 1748243 1756533 ECH