Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00204 ATGGCACATTTCTTTCTTTCACTTTGCATCATCTCCACGACCCTATCCCTCACCTCCTCTTTCACCATCACCACTCCTTCACACACCACCATTCTCAATATCTCCTCTTCCCTTCACCAAGCCCGCCAAATCCTCTCCTTCAAACCCCAAAAACCTCTACAACAAACTTTAACTCAAAAACAAACCCTCACTTCACATTCTTCCCCTTTCTTCTCCCTTCAACTCCACACAAGGGAAACCCTCTTCAATGCACAACACCCAGATTACAAAACCCTAGTTTTGTCCCGACTCGCTCGCGACTCAGCCCGGGTCAACTCGCTCGAGACTAAGCTTCAGCTGGCACTAAATAGCGTCAAAAGATCGGAACTTTACCCGACCCAAACGGAGATCCGACCCGAAGACCTCTCCACGCCTGTCTCCTCCGGCACCTCCCAGGGAAGCGGTGAGTACTTCTCACGCGTCGGCGTTGGCCAGCCCGCAAAGCCTTTCTACATGGTCCTCGACACAGGCTCCGACGTAAACTGGCTCCAATGCAAACCCTGCTCCGATTGTTACCAGCAAACCGACCCGGTTTTCGACCCGACATCATCATCCTCGTACTACCCTTTAACCTGCGACTCGCAGCAGTGTCAGAACCTTGAAATGTCGGCGTGCAGAAACGGTAGATGCCTCTACCAAGTTGCCTACGGTGACGGTTCGTTCACGGTAGGGGAGTACGTCACCGAAACGGTGTCATTCGGCGGGTCTGGATCAGTTAATCGGGTCGCGATGGGGTGCGGGCACGATAATGAGGGGCTATTCATTGGGGCGGCGGGGCTTCTCGGGCTTGGTGGTGGGCCCTTGTCGTTAACCTCCCAAATCAAAGCGGCGTCGTTTTCGTATTGTTTGGTGGACCGCGACTCGGGGAAATCATCCACGCTCGAGTTCAACTCACCTCGACCAGGTGACTCGGTCACCGCGCCGTTGCTGAAGAACCAGAAGGTGAACACGTTCTACTACGTGGAGCTCACCGGATTAAGCGTCGGCGGTAACATTGTCTCCATCCCACCGGAGACTTTCGCCGTCGACCAGTCCGGTGGCGGCGGGGTGATCGTCGATTCCGGCACCGCGATAACTCGGCTGCGGACTCAGGCCTATAACTCGGTGCGCGACGCGTTCAAGAGGATGACTCAGAACCTGCGTCCCGCGGAGGGCGTTGCGCTGTTCGACACGTGCTACGACCTCTCGTCTCTGCAATCGGTGCGCGTTCCGACGGTGTCGTTTCACTTCGCCGGCGATAAGACGTGGGCTCTTCCGGCGAAGAATTATCTGATTCCGGTGGACAGCGCCGGAACTTACTGTTTCGCGTTTGCGCCAACGGCGTCGTCTTTGTCTATCATAGGGAACGTGCAGCAACAGGGGACACGTGTGAGCTTCGATCTAGCGAACTCCGTAGTGGGATTCTCTCCCAACAAGTGCTAG 1461 0.5558 MAHFFLSLCIISTTLSLTSSFTITTPSHTTILNISSSLHQARQILSFKPQKPLQQTLTQKQTLTSHSSPFFSLQLHTRETLFNAQHPDYKTLVLSRLARDSARVNSLETKLQLALNSVKRSELYPTQTEIRPEDLSTPVSSGTSQGSGEYFSRVGVGQPAKPFYMVLDTGSDVNWLQCKPCSDCYQQTDPVFDPTSSSSYYPLTCDSQQCQNLEMSACRNGRCLYQVAYGDGSFTVGEYVTETVSFGGSGSVNRVAMGCGHDNEGLFIGAAGLLGLGGGPLSLTSQIKAASFSYCLVDRDSGKSSTLEFNSPRPGDSVTAPLLKNQKVNTFYYVELTGLSVGGNIVSIPPETFAVDQSGGGGVIVDSGTAITRLRTQAYNSVRDAFKRMTQNLRPAEGVALFDTCYDLSSLQSVRVPTVSFHFAGDKTWALPAKNYLIPVDSAGTYCFAFAPTASSLSIIGNVQQQGTRVSFDLANSVVGFSPNKC 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00204 486 CDD cnd41_like 149 486 IPR033873 -
Phco5g00204 486 PANTHER ASPARTYL PROTEASES 47 480 IPR001461 GO:0004190|GO:0006508
Phco5g00204 486 Pfam Xylanase inhibitor C-terminal 332 482 IPR032799 -
Phco5g00204 486 Pfam Xylanase inhibitor N-terminal 150 309 IPR032861 -
Phco5g00204 486 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 165 176 IPR001969 GO:0004190|GO:0006508
Phco5g00204 486 SUPERFAMILY Acid proteases 144 486 IPR021109 -
Phco5g00204 486 FunFam aspartyl protease family protein 2 127 309 - -
Phco5g00204 486 Gene3D Acid Proteases 124 309 IPR021109 -
Phco5g00204 486 ProSiteProfiles Peptidase family A1 domain profile. 150 482 IPR033121 -
Phco5g00204 486 Gene3D Acid Proteases 313 486 IPR021109 -
Phco5g00204 486 FunFam Aspartyl protease family protein 2 310 486 - -
Phco5g00204 486 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 363 374 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00204 Phco-Chr5 1657411 1658871 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00204 5 1657411 1658871 Phco5g00204 5 1657411 1658871 ECH