Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03712 ATGGAGCCACCCTCCGACCCTCCTCCTCCGGCCACCGTCCCCTTCACCGTCGAACCCAACAATCACCTGCCCCCGCCCGACTCTAACTCCACTCCCAACCACCCGCCGTATGACGAGATGATATACACAGCTATTGGGGCTCTGAAGGAGAAAGATGGGTCGAGCAAGCGCGCCATAGGAAAGTACATAGAGCAAGTGTACAAGAACCTTCCAACCACTCACTCTGCTCTTCTCACTCACCACCTCAACCGTTTGAGATCAGTTAATCTTCTCGTCATGGTCAAAAAGTCCTATAAGCTCCCTGGATCTGATAATCTTCCAACATCTCCTCCCTCTCAAGTCCAGAAGACCCGTGGCAGGCCTCCCAAATCAAAGCCCCAACCCACCGTCGACCCTGTCTGGGCTTCACTCGGCCTGTCGGATGACCCTGCGCCTGGCTCTGCTCCTGAATCCGAAAAGAGAGGCCCGGGTCGTCCCAGAAAGATCCTAGGTGTGAGCCCGGGCACGGCAGTGCCGGCCCGGAGGGGCCGCCCACCAGGCTCCGTTGCGAGATCTAAGTTGTCCAAGAGGGCAGGGCGTCCGCCCAAGCCCAAATCCGTCTCGGGGATCTCCAGTGGGCTCAAACGACGGGGCCGCCCGCCTAAAGCCAAATCCAACCTCTCCATAATCCCCTTTGCGGTTCCGGTTGCTCCTGACCAGCCCACGGTGCAGCCCATCGTTCCAGACGCTTCTGTGCCCAATGGGTCTCCCAGGCCCAGAGGACGCCCCAAAAAGATTGTTCCTCCTGGTGGTGCTCCACCGCTCACTCCCACTGCCGACGGTGGTGCAGCCCGAGGCCGCGGACGGCCACGTGGGGTCTTGCCTATAATTAGGGCGGGTCGGCTCCAGAAACTCGCCGTTGGAAGGGCTAAGAATCCTGCAAGAAGGCCTGTGGGACGCCCTAAGGGATCCACTGCTGCTGCAATCAGTGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTCGAACACTTTCAAACCAAAGTGAAGGAGTCTCTTGGCATGCTTAAGCCGTACTTTAACCATGAAAGCCCAGTCACTGCAATTGCAGCAATTCAAGAGCTGGAGGTGCTGTCAACTTTGGATCTTAAGGCAGCATTGAGGGAAGAGACTCATCAACAGCCAGAGCCACTGCCGCAGACACTGGTGTATGAACAGCAATATGCCCCCCAGGTGCCGCAACAGCCACAGCTGCAGCAATTTTTTCAATCTCATACATCAGCTCAAAACTAG 1275 0.5678 MEPPSDPPPPATVPFTVEPNNHLPPPDSNSTPNHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKNLPTTHSALLTHHLNRLRSVNLLVMVKKSYKLPGSDNLPTSPPSQVQKTRGRPPKSKPQPTVDPVWASLGLSDDPAPGSAPESEKRGPGRPRKILGVSPGTAVPARRGRPPGSVARSKLSKRAGRPPKPKSVSGISSGLKRRGRPPKAKSNLSIIPFAVPVAPDQPTVQPIVPDASVPNGSPRPRGRPKKIVPPGGAPPLTPTADGGAARGRGRPRGVLPIIRAGRLQKLAVGRAKNPARRPVGRPKGSTAAAISAHKAANEDLRKKLEHFQTKVKESLGMLKPYFNHESPVTAIAAIQELEVLSTLDLKAALREETHQQPEPLPQTLVYEQQYAPQVPQQPQLQQFFQSHTSAQN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03712 424 Coils Coil 322 342 - -
Phco4g03712 424 MobiDBLite consensus disorder prediction 1 32 - -
Phco4g03712 424 PRINTS AT-hook-like domain signature 205 216 IPR017956 GO:0003677
Phco4g03712 424 PRINTS AT-hook-like domain signature 248 258 IPR017956 GO:0003677
Phco4g03712 424 PRINTS AT-hook-like domain signature 115 125 IPR017956 GO:0003677
Phco4g03712 424 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 33 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco4g03712 424 MobiDBLite consensus disorder prediction 99 286 - -
Phco4g03712 424 PANTHER HISTONE H1 14 217 - -
Phco4g03712 424 SMART AT_hook_2 308 320 IPR017956 GO:0003677
Phco4g03712 424 SMART AT_hook_2 250 262 IPR017956 GO:0003677
Phco4g03712 424 SMART AT_hook_2 153 165 IPR017956 GO:0003677
Phco4g03712 424 SMART AT_hook_2 207 219 IPR017956 GO:0003677
Phco4g03712 424 SMART AT_hook_2 172 184 IPR017956 GO:0003677
Phco4g03712 424 SMART AT_hook_2 115 127 IPR017956 GO:0003677
Phco4g03712 424 SMART AT_hook_2 188 200 IPR017956 GO:0003677
Phco4g03712 424 SMART AT_hook_2 277 289 IPR017956 GO:0003677
Phco4g03712 424 FunFam Histone H1.2 30 110 - -
Phco4g03712 424 CDD H15 31 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco4g03712 424 MobiDBLite consensus disorder prediction 1 38 - -
Phco4g03712 424 SMART h15plus2 31 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco4g03712 424 Pfam linker histone H1 and H5 family 34 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco4g03712 424 SUPERFAMILY "Winged helix" DNA-binding domain 30 107 IPR036390 -
Phco4g03712 424 Gene3D - 29 112 IPR036388 -
Phco4g03712 424 MobiDBLite consensus disorder prediction 102 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03712 Phco-Chr4 56671823 56674588 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03712 4 56671823 56674588 Phco4g03712 4 56671823 56674588 ECH