Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03704 ATGAGCCACGAGCTGAAGGAGACGTACGCGTGCATGCCCACGACGGAGCGTGGCCGCGGGATTCTGATCTCCGGCGATGCCAAGTCCAACTCCATCGTCTACACCAACGCCAGATCGGTTGTCATCATGAGCCTCCAGAACCCCCTTGACGTCTCCGTCTACGGGGAACATGCCTACCCCGCTACCGTCGCGCGCTTCTCCCCCAACGGCGAGTGGGTCGCCTCTGCTGACGCCTCCGGCACCGTCAGGATCTGGGGCACGCGAAACAACTTCGTTTTGAAGAAGGAGTTCAGAGTCCTCTCCGGTCGCATCGATGACCTTCAGTGGTCACCCGACGGCCTCCGAATCGTTGCCTGCGGCGAAGGCAAAGGGAAGTCATTAGTCCGCGCTTTCATGTGGGATTCGGGGACTAATGTTGGAGAATTTGACGGTCACTCGCGCCGAGTTTTGAGTTGTGCATATAAACCCACGAGACCTTTTCGTGTTGTTACCTGTGGAGAGGATTTTCTGGTTAACTTTTATGAGGGACCTCCTTTTAGATTTAAGCTATCTCACAGGGATCATTCAAATTTTGTGAATTGTGTAAGATATTCTCCAGATGGCAGTAAATTTATAAGTGTAAGTTCTGACAAAAGTGGTATCATCTTCGATGGAAAAAGTGCAGAGAAGATTGGCGAGTTGTCTTCTGAAGGTGGGCATACTGGAAGTATTTATGCTGTTAGCTGGAGTCCTGATGGAAAACAGGTGCTGACTGTGTCTGCTGACAAGTCTGCTAAAGTATGGGACATATCAGAGGACAATATCGGAAAGGTGAAGAAAACTTTGACTTGTCCTGGCACTGGTGGAGTTGAAGATATGCTAGTGGGGTGCCTATGGTTGAATGATTATCTTGTCACTGTTTCTCTGGGTGGGATAATATCCATATTTTTAGCAAGCGATCTTGATAAAGCCCCGACAGCATTTTCTGGACATATGAAAAATGTTTCCTCCTTATCTATTCTTAGAAGTAACCCTAAAGTGCTCTTGTCTAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGGAAAAGTACAAAGGAAGGAAGGTTCTCAAATCAAAAGCTTAGTAGCTGTAGAAGAAGAGATTGTTACATCTGGATTTGATAATAAGATAAGGCGAGTTTCTTTACATGGGGATCAGTGTGGAGATCCTGAGGCCATTGATATAGGAAGTCAACCAAAGGACTTGAGTGTTGCACTTCTTTCTCCTGAACTAGCTCTAGTCTCAATAGATTCTGGAGTTGTCATGCTGCGTGGTACAAAAATTGTCTCAACCATTAATCTGGGGTTTGTTGTGACTGCATCTACTGTCTCACCTGATGGAAGTGAAGCCATTATTGGTGGACAGGATGGTAAATTACACATTTATTCTATTTCTGGTGATACTCTTGTAGAAGAGGCTGTCCTTGAGAAACATAGGGGTGCTATTAGTGTCATACGTTATTCTCCAGATGTTTCAATGTTTGCATCAGGGGATGTCAACCGAGAAGCTATAGTGTGGGACCGCTCCTCCCATGAGGTGAAGCTTAAGAACATGTTGTATCATAGTGCTAGGATAAACTGTCTTGCATGGTCACCTGATAGCAGTAGGATTGCCACAGGATCGCTTGACATGTGTGTGATCATATATGAAGTTGATCAGCCTGCATCTAGTAGAATTACCATAAAGGGTGCTCATTTAGGTGGGGTTTATGGGTTAACATTCAGCGACGAGTATAGTTTGGTTAGCTCAGGTGAGGATGCTTTTATCCGTGTTTGGAAGATAACCCCTCCTTGA 1833 0.4566 MSHELKETYACMPTTERGRGILISGDAKSNSIVYTNARSVVIMSLQNPLDVSVYGEHAYPATVARFSPNGEWVASADASGTVRIWGTRNNFVLKKEFRVLSGRIDDLQWSPDGLRIVACGEGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLVNFYEGPPFRFKLSHRDHSNFVNCVRYSPDGSKFISVSSDKSGIIFDGKSAEKIGELSSEGGHTGSIYAVSWSPDGKQVLTVSADKSAKVWDISEDNIGKVKKTLTCPGTGGVEDMLVGCLWLNDYLVTVSLGGIISIFLASDLDKAPTAFSGHMKNVSSLSILRSNPKVLLSSSYDGLIVKWIQGIGYSGKVQRKEGSQIKSLVAVEEEIVTSGFDNKIRRVSLHGDQCGDPEAIDIGSQPKDLSVALLSPELALVSIDSGVVMLRGTKIVSTINLGFVVTASTVSPDGSEAIIGGQDGKLHIYSISGDTLVEEAVLEKHRGAISVIRYSPDVSMFASGDVNREAIVWDRSSHEVKLKNMLYHSARINCLAWSPDSSRIATGSLDMCVIIYEVDQPASSRITIKGAHLGGVYGLTFSDEYSLVSSGEDAFIRVWKITPP 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 264 - -
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 610 IPR001680 GO:0005515
Phco4g03704 610 Pfam WD domain, G-beta repeat 186 212 IPR001680 GO:0005515
Phco4g03704 610 Pfam WD domain, G-beta repeat 534 562 IPR001680 GO:0005515
Phco4g03704 610 Pfam WD domain, G-beta repeat 576 606 IPR001680 GO:0005515
Phco4g03704 610 Pfam WD domain, G-beta repeat 64 85 IPR001680 GO:0005515
Phco4g03704 610 Pfam WD domain, G-beta repeat 231 262 IPR001680 GO:0005515
Phco4g03704 610 SUPERFAMILY WD40 repeat-like 296 479 IPR036322 GO:0005515
Phco4g03704 610 CDD WD40 57 350 - -
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Phco4g03704 610 FunFam Actin-interacting protein 1 12 338 - -
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Phco4g03704 610 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 20 568 IPR011047 -
Phco4g03704 610 FunFam Actin-interacting protein 1 339 607 - -
Phco4g03704 610 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 607 - -
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Phco4g03704 610 SMART WD40_4 90 134 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 220 262 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 525 563 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 438 476 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 47 86 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 481 520 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 135 175 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 314 354 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 178 217 IPR001680 GO:0005515
Phco4g03704 610 SMART WD40_4 567 606 IPR001680 GO:0005515
Phco4g03704 610 Gene3D - 8 607 IPR015943 GO:0005515
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 572 IPR001680 GO:0005515
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 529 IPR001680 GO:0005515
Phco4g03704 610 Gene3D - 12 338 IPR015943 GO:0005515
Phco4g03704 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Phco4g03704 610 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03704 Phco-Chr4 56620858 56624940 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03704 4 56620858 56624940 Phco4g03704 4 56620858 56624940 ECH