Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03690 ATGCAGAAGCTGAGTGTCTGCGCAGTGCAACCTCTCTCCCTCTCAGCAGTCACCACCACCGTGCCTATGGCATGTTCCGGCATAGTTCAGGGCTTCGTTAGACTCAAAACCATGACGCGGCTTCGCTTCACTCCTCTCAGACCTTCTTTTCCATCCATTTCCGTCATTCCTTTTCACCGCGCCGCCATTCGCCTCCGCTCCTCCTCCACCACACTTCAAGTCGTCAACGTCACGCGCCCGAGGACCGCCGCGCGCAAGGGGACCGTTGGGTTACCGTTTTGGCACCAGCGCAGCTCCAGCTATGGTCGTTTTGCGTACCAGGACGAGTCCAGTGACGATTCCGATGTCGAATTCGCGTCTCCCCCCTCTCACAGCCAACAAGTGGGTGACTCAACGCTCGAGAACATTGACGAGTGGAGATGGAAGCTGACCATGCTTATGCGCTCCAAAGACGAACTAGAAGTGGTGTCCAGAGAGAAGAAGGACCGTCGTGATTTCGAGCAGCTTTCCACTTTAGCTACCAGGATGGGTTTGTATAGCCGGCAATATGCAAGAGTTGTTGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAACGCCCACAGAGAGAGGTAGTCTTACCATTTGGCATTCATAAAGAAGTAGACGCCCATCTCCATGCCCATCTTTCACAAAAGGCTACAAACTCGTGGAGTTCTTTGAATTCATTACATGAATCAAGTGATACTAGAAGCATTCCAGCCAATGAAGGAATGCATGAACAGCCAGATCCCATGACTCATAATAGTGTTGTCAAGCAGAAAATCCTTCAAAAAAGAAGTTTGCAACTGCTTCATCGGCAACAGGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCCGCTTTCAAAGAGAAGGATGCATTTTTGAGATTGATTTCAGAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGACTGAGGCTGCACGTGGAGCTGTATGTAACATAATTTGTACTCAGCCCAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGAGGGGAGAAGTTGGGGGAATCTGTTGGATACAAAGTTCGCTTGGAGGGTATGAAAGGGAGAGATACCCGTCTTCTTTTTTGCACCACAGGTGTATTATTGCGGAGACTGCTTGTGGATGGGAATTTAAAAGGTGTAACTCATGTTATTGTCGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTCGTCGTCCTGATTTGAGATTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCTTACTTTAATGGTGCTCCGACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGAAATTCTGGAAAGAACTGGACATCGGTTGACGCCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAGCTCAAGCTTTCAGGAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCTTTGGAAGTTGCAGACTTTAAGAGATATAGCCTACGCACCCAAGATTCATTGTCCTGTTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGTCACATTGTTAAGAATGAAAGGCCGGGAGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGCTCATCCTTTGTTGGGCGATCAGAGCCGAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGTGTGAGGAAAATTGTTCTGGCAACTAACATGGCGGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACATCTTATGATGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCAGCCCGGCAGAGAAGAGGAAGGGCTGGTCGTGTTCAGCCTGGCGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAAATGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTGTGTCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGAGCTCTACAGCCACCAGAGCCTCTATCGGTTGAAAATGCTGTTGAATATTTGAAGATTATCGGGGCCTTAGATGGGAATGAAAATTTAACAGTTTTAGGGCAAAAATTGGCAATGCTTCCTGTAGAACCCAAACTTGGCAAGATGCTCATTTTAGGAACCATCTTCAAGTGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTAAGTGTAAGAGATCCATTTGTGATGCCATCTGACAAGAAGGATCTTGCAGAGTCTGCCAAATCCCAATTTGCTGGTCGTGAGTATAGTGATCATCTTGCACTTGTCCGGGCTTATGAGGGTTGGAAAGATGCTGAGACACAGCAAGCTGGTTATGAGTACTGTTGGCAAAATTTTCTTTCTTCTCAAACACTTAAGGCCATTGAGTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTCAATAACAAGCCTGAAACCTACAATGCATGGAGTCGTGAAGTGCATCTCATCAGAGCGGTCATCTGTGCGGGTTTGTTTCCCGGAATATCTTCTGTTGTGAACAAAGATAAGTCAATAGCACTGAAGACAATGGAGGATGGTCAAGTTCTTTTGTATTCTAGCTCTGTAAATGGCTGTGTACCCCGAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTCAGAGATTCAACTGGTATATCTGATTCGGCGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTTGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAATTTTTCATGAAACCAGAATTAGCCAAGACTTACTTAAGCTTAAAGATGGAACTCGAAGAATTGATACAGAAAAAGCTTCTGGATCCCACGCTGGAAACACAATCGCATAGTCAGCTTCTTTCAGCTGTTAGATTGTTGGTTTCAGAGGACCGTTGTGATGGTAGGTTTGTCTTTGGTCGCCAAGTCCTATCACAAGTAAAGAAGGAAACAAACTCCAAAAGTGGAGTCGAGGGTGAAAATTTTAAAAATAAACTTCAAACATTTCTTAACAGGGCTGGACATGAATCACCAACTTACAAAACAAAGCAGCTGAATAACTACCAATTCCGGTCTACTGTCATATTTAATGGGTTGAATTTTGCTGGTCAGCCATGCAGCAGCAAGAAATTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTTCTATGGTTAAAAGGGGATAGCCATTCATCTGATGGTATTGACCATGCATCAGTTCTTTTGAAGAAGAGCAACAAGAAAAGTAGGAAGAAATCGTTTAGTGACGCTAAATGGAGTTGA 3606 0.4368 MQKLSVCAVQPLSLSAVTTTVPMACSGIVQGFVRLKTMTRLRFTPLRPSFPSISVIPFHRAAIRLRSSSTTLQVVNVTRPRTAARKGTVGLPFWHQRSSSYGRFAYQDESSDDSDVEFASPPSHSQQVGDSTLENIDEWRWKLTMLMRSKDELEVVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVVLPFGIHKEVDAHLHAHLSQKATNSWSSLNSLHESSDTRSIPANEGMHEQPDPMTHNSVVKQKILQKRSLQLLHRQQDWQESPEGQKMLEFRRSLPAFKEKDAFLRLISENQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDGNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEEILERTGHRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVADFKRYSLRTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSRVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQMPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVENAVEYLKIIGALDGNENLTVLGQKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKSQFAGREYSDHLALVRAYEGWKDAETQQAGYEYCWQNFLSSQTLKAIESLRKQFFYLLKDIGLVNNKPETYNAWSREVHLIRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGCVPRIPYPWLVFNEKVKVNSVFLRDSTGISDSALLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQKKLLDPTLETQSHSQLLSAVRLLVSEDRCDGRFVFGRQVLSQVKKETNSKSGVEGENFKNKLQTFLNRAGHESPTYKTKQLNNYQFRSTVIFNGLNFAGQPCSSKKLAEKSAAAEALLWLKGDSHSSDGIDHASVLLKKSNKKSRKKSFSDAKWS 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03690 1201 Gene3D - 256 483 IPR027417 -
Phco4g03690 1201 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 924 1006 IPR011709 -
Phco4g03690 1201 MobiDBLite consensus disorder prediction 237 253 - -
Phco4g03690 1201 CDD SF2_C_RHA 562 713 - -
Phco4g03690 1201 Gene3D - 568 723 IPR027417 -
Phco4g03690 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 885 IPR027417 -
Phco4g03690 1201 CDD DEXHc_RHA-like 321 481 - -
Phco4g03690 1201 SMART ultradead3 303 496 IPR014001 -
Phco4g03690 1201 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 482 IPR014001 -
Phco4g03690 1201 Pfam Helicase associated domain (HA2) 768 844 IPR007502 GO:0004386
Phco4g03690 1201 SMART helicmild6 599 705 IPR001650 -
Phco4g03690 1201 FunFam DExH-box ATP-dependent RNA helicase DExH3 258 483 - -
Phco4g03690 1201 PANTHER ATP-DEPENDENT RNA HELICASE 257 1048 - -
Phco4g03690 1201 FunFam DExH-box ATP-dependent RNA helicase DExH3 567 723 - -
Phco4g03690 1201 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1103 1168 IPR014720 -
Phco4g03690 1201 Pfam Double-stranded RNA binding motif 1105 1166 IPR014720 -
Phco4g03690 1201 MobiDBLite consensus disorder prediction 1181 1201 - -
Phco4g03690 1201 MobiDBLite consensus disorder prediction 237 265 - -
Phco4g03690 1201 Pfam Helicase conserved C-terminal domain 573 704 IPR001650 -
Phco4g03690 1201 SUPERFAMILY dsRNA-binding domain-like 1101 1171 - -
Phco4g03690 1201 Gene3D - 747 848 - -
Phco4g03690 1201 SMART DRBM_3 1104 1167 IPR014720 -
Phco4g03690 1201 FunFam Putative ATP-dependent RNA helicase DHX36 747 851 - -
Phco4g03690 1201 SMART ha2_5 767 858 IPR007502 GO:0004386
Phco4g03690 1201 Gene3D - 1083 1171 - -
Phco4g03690 1201 Pfam DEAD/DEAH box helicase 314 466 IPR011545 GO:0003676|GO:0005524
Phco4g03690 1201 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 745 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03690 Phco-Chr4 56543119 56554310 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03690 4 56543119 56554310 Phco4g03690 4 56543119 56554310 ECH