Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03602 ATGTGTTCTTCGGAGACAATCAATATTGCTGCGAGTACGCAGAAACTCGATGTTGATAATCGACTTGCTCTCCGATTCTACTACAGGATCGCTGATAATATCCTCAAACAGGCTGATATCTTTCGTGCAGAAAAAAATATTGTCGATCTATATGTCATGCTCCTAAGATTTTCTAGTTTGGTCTCTGAGACAATACCACGTCACCGAGATTATAGATCATCTCCACAAAGCAAGAAAGAAATTTTGAGAAAGAAATTGTTAAATTCTGTGAATGAACTGGAGAAATTGAAACCAAAGGTGCAACAGAAGATCAATGAGTTTAACAGCAGGCGAGAATACCACCATCACAAACACAATGGACGGGAAAAATGTCATTCAACTAATTTGATGGTTTCTCCAGTGAAAAAACAAACTTTGGCTAGTTATGATCAATCAAAGGCAATCGTACCAACTACCGGAGAGATTGCTTACCAAGGATCCAGGGCCCAGCAGTTTTCTAGTGTAAGGCCTGTGGAAGAAAATATGAGGAGACTTCTCCTACGTCCAAAGGAGGAAACTCTCTCCAGACATTCTATTCTAGGTCCCAATGGGCTTAAAGGGCAGTGGCGACCACCTGCAAGTGATAAAGGGGTCAGGTATCCAACCATCGTAGATTTGTCTCCAGTTGAAATTCCAAGCCTTCAGCAACCCTTGGAAGATGGATCTCTGAGTGATAAAGATAATAGCATTTCAGAACAACATAGATCAGATTTAGAATCATTTCTTACCCAGAGTGACAACTTCCGGGAAAAGCATGCTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAATCCCTACTCAAATAGAAGTTATCAGACAGCCATCTCCTCCACCTGTACTTGCTGAAGTACAAGATTTGATTCCAGCAGTGTCACCTCGTGTTATTGAGGAAGGATGCAAGACAGAAATTCCGACGACAGATGTTCGTGCTGAGTCTCCTCTGCAACTACACATTTCAACTTCTATGATGAAGACTTTTATGAAGTTAGCCAAGTCAAACACTGACAAAAATTTAGAGACTTGTGGTATTCTTGCAGGTTTGCTTAAAAACAGAAAATTTTATATTACCGCTCTAATAATCCCAAAGCAGGAGGCAACATCTAGTTCTTGCCAAGCTACAAACGAAGAGGAGATATTTGAAGTACAGGATAAGCAATCTCTTTTCCCCCTTGGATGGATCCACACACATCCCACGCAATCTTGTTTCATGTCATCAATTGATGTACACACCCATTACTCATATCAGATTATGCTTCCAGAAGCTGTTGCAATAGTTATGGCACCAACAGACAGTTCAAGAACCCATGGCATTTTTCGGTTGACAACCCCTGGTGGAATGTCGGTCATAAGACAATGTCCGCAACGTGGCTTTCATTCACATAATCAGCCTCCAGATGGTGGCCCCATTTACGATACATGCACAGATGTTTACATGAACCCAGATTTAAAATTTGATGTCATTGATCTTCGATGA 1521 0.4103 MCSSETINIAASTQKLDVDNRLALRFYYRIADNILKQADIFRAEKNIVDLYVMLLRFSSLVSETIPRHRDYRSSPQSKKEILRKKLLNSVNELEKLKPKVQQKINEFNSRREYHHHKHNGREKCHSTNLMVSPVKKQTLASYDQSKAIVPTTGEIAYQGSRAQQFSSVRPVEENMRRLLLRPKEETLSRHSILGPNGLKGQWRPPASDKGVRYPTIVDLSPVEIPSLQQPLEDGSLSDKDNSISEQHRSDLESFLTQSDNFREKHADEAPSLISFEATEIPTQIEVIRQPSPPPVLAEVQDLIPAVSPRVIEEGCKTEIPTTDVRAESPLQLHISTSMMKTFMKLAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQEATSSSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPTDSSRTHGIFRLTTPGGMSVIRQCPQRGFHSHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03602 506 FunFam AMSH-like ubiquitin thioesterase 3 318 506 - -
Phco4g03602 506 Gene3D - 3 128 - -
Phco4g03602 506 PANTHER AMSH-LIKE PROTEASE 4 506 - -
Phco4g03602 506 MobiDBLite consensus disorder prediction 190 209 - -
Phco4g03602 506 MobiDBLite consensus disorder prediction 227 249 - -
Phco4g03602 506 Gene3D Cytidine Deaminase, domain 2 315 506 - -
Phco4g03602 506 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 329 435 IPR000555 GO:0005515|GO:0008233|GO:0008237
Phco4g03602 506 Coils Coil 83 110 - -
Phco4g03602 506 SMART pad1_6 331 459 IPR000555 GO:0005515|GO:0008233|GO:0008237
Phco4g03602 506 Pfam USP8 dimerisation domain 8 103 IPR015063 -
Phco4g03602 506 SUPERFAMILY USP8 N-terminal domain-like 22 124 - -
Phco4g03602 506 SUPERFAMILY JAB1/MPN domain 331 462 - -
Phco4g03602 506 CDD MPN_AMSH_like 331 506 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Phco4g03602 506 ProSiteProfiles MPN domain profile. 332 462 IPR037518 -
Phco4g03602 506 FunFam AMSH-like ubiquitin thioesterase 3 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03602 Phco-Chr4 55895017 55902239 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03602 4 55895017 55902239 Phco4g03602 4 55895017 55902239 ECH