Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03586 ATGAGAAACTCTCTGCAGTTTTTTTGGCCTCAGATCTTGTGTTTCATATTATTCAGTTTTCAATTTGAAGTTCAAACAAAATCCACCATTGAACCATGCAATTCCTCAGACTCCTGCACCTCTCTCCTCTCTTATCTCTTGCCCTGGGACTCCAAAGTATCCGAAATCGCCACTCGTTTCCACGTAAACGTCTCTGATATCTTGGCATCGAACTCTCTCTTCCCCATAACATCATCAAGTGCACACCAAATCCTCAGGGCCAAAACGTTGGTGAAAATACCCATCTTCTGCTCTTGTGTGGATGGCATCCGAAGGTCCATGTCAACCATTTACACTGTTCATGCAGCAGACACAGCTGCCTCCATATCAGAAGGTTATGGTGGGTTGGTTAGCATTGAACAAATCAAGATTGCGAACAGCATCAATGCCACCAATCCCTTGACGAGTGGAGGCACCCTTGTTATTCCACTGCCATGCACATGTTTTAACAACGTTAACAATGGGGGAAGCGCTGTTTACATGTCATATGTTGTGCAGAGAAGAGAGAGCCTGAGTAGCATAGCATCAAAGTTTGGTACAACTTTTTCGGACTTGGAAACTGTAAATGGGTTTTGGGAAGCTACGGTAGATCCCGGAGACATTCTATCTGTTCCCATTGCAGCATGTTCATCAGCAACCTTGAAATGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCCAGCAACTGCATCAAATGCAGTTGCGAACCAATGGATATTACGATGCGATGTGTTCCTTCTGGACTAGATGTCCCCTGCTATAATTTACGTTGCAAAGAATCAAATCTTATTATTGGCAATGAATGCGTGGAGCGTTCAGAAACAGCTTGCAATGTGATCCAATGTGTTTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGTATGAAGAACTCGTCATACCTCCAGTGCCCTGATAATCTGTGTCATAGTGTAGCACCATGTTGGCCTTTCTCATCATATCCTGAAGACCCGTTTGGTATGTCTCCAAAGCCATCGCCCTCCTTGCCACTGCCAGTTTCTAAAGCTTCTCTCAGTGCCTCCAATGGAAGGCTTGGTCAATTTTTAATCAATGTGCTGCAAATATTCTTATTTTTAAAGTTTATCCTTATTTTCTGA 1173 0.4348 MRNSLQFFWPQILCFILFSFQFEVQTKSTIEPCNSSDSCTSLLSYLLPWDSKVSEIATRFHVNVSDILASNSLFPITSSSAHQILRAKTLVKIPIFCSCVDGIRRSMSTIYTVHAADTAASISEGYGGLVSIEQIKIANSINATNPLTSGGTLVIPLPCTCFNNVNNGGSAVYMSYVVQRRESLSSIASKFGTTFSDLETVNGFWEATVDPGDILSVPIAACSSATLKWYDESMIVPNGSYTLTASNCIKCSCEPMDITMRCVPSGLDVPCYNLRCKESNLIIGNECVERSETACNVIQCVYRGHRGGKILSSMKNSSYLQCPDNLCHSVAPCWPFSSYPEDPFGMSPKPSPSLPLPVSKASLSASNGRLGQFLINVLQIFLFLKFILIF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03586 390 ProSiteProfiles LysM domain profile. 174 217 IPR018392 -
Phco4g03586 390 ProSiteProfiles LysM domain profile. 109 155 IPR018392 -
Phco4g03586 390 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 21 324 - -
Phco4g03586 390 Gene3D LysM domain 168 226 IPR036779 -
Phco4g03586 390 Gene3D LysM domain 103 167 IPR036779 -
Phco4g03586 390 SMART LysM_2 110 156 IPR018392 -
Phco4g03586 390 SMART LysM_2 175 218 IPR018392 -
Phco4g03586 390 Pfam LysM domain 111 156 IPR018392 -
Phco4g03586 390 Pfam LysM domain 176 218 IPR018392 -
Phco4g03586 390 CDD LysM 175 217 IPR018392 -
Phco4g03586 390 SUPERFAMILY LysM domain 174 218 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03586 Phco-Chr4 55788547 55791249 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03586 4 55788547 55791249 Phco4g03586 4 55788547 55791249 ECH