Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03415 ATGCCGGGTCTTGTTTCCGTAAAAACCCCACCGGAGGCTCAACCGCTCCGGATATCCGTACCAAACACTCCGACGCAGAGATCCGAAGCGAACAACGCCAACAGCAAAACGCCGTCTCCACTTCCCAAAAAACCACCATCTCCATCACCTTCTCGTTCCTCAAAGAAGAAAACTCCCGAAACCCCTACCAACCCGGTTCTCTCCGATGCCTCTCTCGATAACCCCGATCTCGGCCCATTCCTACTTAAACTGGCACGCGACACCATCGCCTCCGGTGACGGGCCCGCCAAGGCCCTCGACTTCGCGGTGCGGGCCTCCAAGTCCTTCGAGCGCTGCGCCGTCGAGGGCGAGCCTAGCCTCGACCTCGCAATGAGCCTCCACGTCCTCGCTGCTATCTACTGCAGCCTTGCCCGCTTCGAGGAAGCCGTTCCTGTCCTCGAACGCGCCATACAGGTCCCCGACGTCGCGCGCGGCGCTGATCACGCCCTGGCTGCCTTCTCCGGGTATATGCAGCTCGGCGACACCTTCTCCATGCTCGGCCAGGTCGACCGATCCATCTCCTGCTACGACCAGGGGCTCCAGATCCAGATCCAAGCCCTGGGCGAAACTGATCCCCGCGTCGGTGAAACTTGCCGATACTTGGCGGAGGCGAATGTGCAAGCGATGCAGTTTGACAAAGCGGATGAGCTGTGTAAGAGAACTCTGGAGATTCATCGCGTGCATAGTGAACCGGCTTCACTTGAGGAAGCTGCCGATAGGAGGCTTATGGCACTGATTTGCGAGGCGAAGGGAGATTATGAATCGGCATTGGAGCATCTTGTGCTTGCTAGCATGGCTATGATTGCAAATGGTCAGGATAGTGAGGTTGCGTCGATTGATGTTAGCATTGGGAACATTTACATGTCACTTTGTCGTTTTGATGAGGCGATTTTCTCGTATCAGAAGGCACTTACTGTGTTTAAGTCTGCCAAGGGTGAAAACCACCCTTCTGTTGCGTCTGTTTTTGTGCGTCTGGCCGATTTGTACCACCGGACTGGGAAGCTTCGTGAGTCGAAATCGTACTGTGAGAATGCACTCAGGATTTACTCAAAGCCGGTGCCAGGTACCACTGCAGAGGAGATTGCTGGTGGCTTGACAGAGGTTTCGGCAGTTTTTGAATCTGTGGATGAGCCAGAGGAGGCACTGAAGCTGTTAAGCCGGGCCATGAAGTTGTTGGATGATAAGCCAGGGCAGCAGAGCACTATTGCAGGGATTGAGGCACGTATGGGAGTGATGTATTACATGATTGGCAGGTATGAAGACTCAAGGAACTCATTTGAGAGTGCTGTTGCTAAACTCAGGGCCAGTGGGGAGCGGAAGAGTGCCTTCTTTGGAGTTGTTCTGAACCAGATGGGGTTGGCGTGTGTTCAACTGTTCAAGATAGACGAGGCTGCTGAATTGTTTGAAGAAGCCAGGGGAATTCTTGAACAGGAGTGTGGCTCCTGTCATCAAGATACTCTTGGAGTGTACAGCAATCTTGCAGCTACATATGATGCTATGGGAAGAGTGGGAGATGCGATTGAGATCTTAGAATATGTCCTGAAGTTGAGGGAGGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGTCTGGCTGAGCTTCTGAAAGAAGCAGGCAAGACACGGGACAGAAAAGCAAAATCTCTGGAAAACCTTATTGATCCTGGTTCAAAGAGGACCAAGAAGGAGGGAACAAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1779 0.5267 MPGLVSVKTPPEAQPLRISVPNTPTQRSEANNANSKTPSPLPKKPPSPSPSRSSKKKTPETPTNPVLSDASLDNPDLGPFLLKLARDTIASGDGPAKALDFAVRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLARFEEAVPVLERAIQVPDVARGADHALAAFSGYMQLGDTFSMLGQVDRSISCYDQGLQIQIQALGETDPRVGETCRYLAEANVQAMQFDKADELCKRTLEIHRVHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDSEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAVFESVDEPEEALKLLSRAMKLLDDKPGQQSTIAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGSCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPGSKRTKKEGTKRWPGLGFRI 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03415 592 Gene3D Tetratricopeptide repeat domain 81 277 IPR011990 GO:0005515
Phco4g03415 592 MobiDBLite consensus disorder prediction 557 586 - -
Phco4g03415 592 Pfam MalT-like TPR region 128 278 IPR041617 -
Phco4g03415 592 MobiDBLite consensus disorder prediction 557 592 - -
Phco4g03415 592 Coils Coil 541 561 - -
Phco4g03415 592 Gene3D Tetratricopeptide repeat domain 278 458 IPR011990 GO:0005515
Phco4g03415 592 Gene3D Tetratricopeptide repeat domain 459 583 IPR011990 GO:0005515
Phco4g03415 592 Pfam Tetratricopeptide repeat 289 363 - -
Phco4g03415 592 Pfam Tetratricopeptide repeat 460 532 - -
Phco4g03415 592 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 452 569 - -
Phco4g03415 592 SUPERFAMILY TPR-like 164 363 IPR011990 GO:0005515
Phco4g03415 592 SMART tpr_5 416 449 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 375 408 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 250 283 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 166 199 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 332 365 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 208 241 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 290 323 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 500 533 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 458 491 IPR019734 GO:0005515
Phco4g03415 592 SMART tpr_5 123 156 IPR019734 GO:0005515
Phco4g03415 592 MobiDBLite consensus disorder prediction 16 38 - -
Phco4g03415 592 MobiDBLite consensus disorder prediction 51 70 - -
Phco4g03415 592 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 31 573 - -
Phco4g03415 592 SUPERFAMILY TPR-like 417 558 IPR011990 GO:0005515
Phco4g03415 592 ProSiteProfiles TPR repeat profile. 290 323 IPR019734 GO:0005515
Phco4g03415 592 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03415 Phco-Chr4 54411097 54413925 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03415 4 54411097 54413925 Phco4g03415 4 54411097 54413925 ECH