Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03408 ATGGCAAGCATTGCTGGGACATGTCCTTTAGGAGCATTGCTCAGAAACAGTGTCTCAGAAAACAATAGGAAGATGTCTGTGGTTCATTACGAGGGGCTTAGATTGCCACAGCGAATGCAAATTCCTTCTTCACATACAACTATTCCAAGCCACTACATTTCAGCTTCTTCATCTCCAAGATGCAGGACAATCAAGGCCATGGCTTCCCCAACCGTTGCAGCACCAAATAGAGAAAAGGATCCAAAAAAGAGGGTAGTTATAACAGGAATGGGTCTTGTTTCAGTCTTTGGCAGTGACATTGACGCCTTTTACAACAAACTTCTTGAGGGAGAAAGTGGGATAAGCCTTATAGATAGGTTTGATGCCTCAAGTTTCTCTGTCCGTTTTGGAGGTCAGATACGTGATTTCTCTTCAGAAGGTTACATTGATGGCAAGAATGATAGGCGCCTTGATGATTGCTGGAGGTATTGCATTGTTGCAGGCAAGAGGGCACTCAATGATGCCAACCTTGGACAACAAGTCCTTGACACTATGGACAAAACAAGAATAGGAGTTCTGGTGGGAACAGGAATGGGAGGTTTAACGGCTTTCTCTTCTGGTGTGCAAGCTCTTATCCAGAAGGGATATAAGAAAATTACTCCATTTTTCATTCCCTACTCCATCACCAACATGGGTTCTGCTTTGTTGGCTATAGACACAGGCCTAATGGGTCCAAATTATTCCATTTCCACTGCTTGTGCAACAGCAAATTACTGCTTTTATGCGGCTGCTAATCACATTAGAAGAGGTGAAGCAGATATAATGGTGGTTGGTGGGACTGAGGCTGCAATCATGCCTACTGGTGTTGGAGGTTTCATTGCTTGCAGGGCTTTGTCTCAGAGGAATGAAGACCCCAAGAAGGCTTCACGACCATGGGACAAAGATCGTGATGGTTTTGTAATGGGCGAAGGCTCTGGTGTGCTGATAATGGAGAGCTTGGAGAGTGCAACAAAGAGGGGAGCCACCGTAATAGCAGAATATTTGGGAGGTGCCATAACATGTGATGCTCATCACATGACTGATCCAAGATCTGATGGACTAGGAGTTTCATCTTGTATAACCAAGAGTTTAGAAGATGCTGGAGTTTCTCCCGAAGAGGTGAACTATGTGAATGCTCATGCCACATCAACATTGGCTGGTGACCTGGCTGAAGTTAATGCAATCAAAAAGGTTTTTAAGGACACATCAGAGTTGAAAATGAATGCAACTAAGTCAATGATTGGTCATGGTCTTGGAGCTGCTGGAGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGGTGCACCCAACCATTAACCAAGATAACTTGGAGCCTAGTGTTACAATTGACACTGTCCCTTACGTTAAGAAACAGCATGAAGTTAATGTTGGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGACCATAA 1488 0.4409 MASIAGTCPLGALLRNSVSENNRKMSVVHYEGLRLPQRMQIPSSHTTIPSHYISASSSPRCRTIKAMASPTVAAPNREKDPKKRVVITGMGLVSVFGSDIDAFYNKLLEGESGISLIDRFDASSFSVRFGGQIRDFSSEGYIDGKNDRRLDDCWRYCIVAGKRALNDANLGQQVLDTMDKTRIGVLVGTGMGGLTAFSSGVQALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMVVGGTEAAIMPTGVGGFIACRALSQRNEDPKKASRPWDKDRDGFVMGEGSGVLIMESLESATKRGATVIAEYLGGAITCDAHHMTDPRSDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSELKMNATKSMIGHGLGAAGGLEAIATIKAITTGWVHPTINQDNLEPSVTIDTVPYVKKQHEVNVGISNSFGFGGHNSVVVFAPFRP 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03408 495 PANTHER POLYKETIDE SYNTHASE-RELATED 81 493 IPR000794 -
Phco4g03408 495 CDD KAS_I_II 83 490 IPR000794 -
Phco4g03408 495 Pfam Beta-ketoacyl synthase, C-terminal domain 338 450 IPR014031 -
Phco4g03408 495 SUPERFAMILY Thiolase-like 83 334 IPR016039 GO:0016746
Phco4g03408 495 Pfam Beta-ketoacyl synthase, N-terminal domain 83 329 IPR014030 -
Phco4g03408 495 ProSitePatterns Ketosynthase family 3 (KS3) active site signature. 237 253 IPR018201 GO:0004315|GO:0006633
Phco4g03408 495 NCBIfam beta-ketoacyl-ACP synthase II 83 490 IPR017568 GO:0006633|GO:0016747
Phco4g03408 495 FunFam 3-oxoacyl-[acyl-carrier-protein] synthase 2 57 495 - -
Phco4g03408 495 SUPERFAMILY Thiolase-like 297 491 IPR016039 GO:0016746
Phco4g03408 495 SMART Beta-ketoacyl synthase 85 495 IPR020841 -
Phco4g03408 495 Gene3D - 52 494 IPR016039 GO:0016746
Phco4g03408 495 ProSiteProfiles Ketosynthase family 3 (KS3) domain profile. 82 492 IPR020841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03408 Phco-Chr4 54362635 54365597 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03408 4 54362635 54365597 Phco4g03408 4 54362635 54365597 ECH