Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03397 ATGGGGTGTTGCTGCACCAAAGAGCGACTTGATCATGAAGATCCAGCATTTCTTGCTTCCCAAACCTATTTTAAAGTTTCTGACATTGAAGCATTGCATGTTCTGTTCAAGAAATTAAGCAGCTCCATGGTGGACGACGGGGTTATCAGCAAAGAAGAGTTTCAGCTTGGCGTACTTGGAAACAGCAAGAAACGGAGCTTCTTTACTGACAGGTTATTTCAATTATTTGACTCAAATAAAGATGGGGTGATAGAATTTGGAGAGTTCATTCGAGGTCTAAGTGTCTTCCACCCATCAGCACCACAAGCACAAAAAGCAGACTTTGCATTTCGACTCTATGATATATGTCAAAGAGGCTTTATGGAACGTGACGAGGTAAGAGAGATGGTATTGGCACTACTGAATGAGTCAGATCTGGTTCTGTCTCATGACATTATTGAGGTCGTAATTGATAAGACCTTCGAAGAAGCAGACTCAAAAGGAGATGGAAGAATTGATCCAGAGGAGTGGCAAGAATTTGTTGGTCGAAAACCAATCTTATTGAGAAATATGAATATTCCCTATTTGAAGGATCTTAATACACAGTTTCCCTGCTTCAAACAAACATCGGGCATTGAAGACTATACAAGCAGCTCATCCCCTGAGAAAGACAACAGTGTCAACATCAATATTACGCAAAAAAAAGAGACCACCTTTGATTCTTGA 705 0.4043 MGCCCTKERLDHEDPAFLASQTYFKVSDIEALHVLFKKLSSSMVDDGVISKEEFQLGVLGNSKKRSFFTDRLFQLFDSNKDGVIEFGEFIRGLSVFHPSAPQAQKADFAFRLYDICQRGFMERDEVREMVLALLNESDLVLSHDIIEVVIDKTFEEADSKGDGRIDPEEWQEFVGRKPILLRNMNIPYLKDLNTQFPCFKQTSGIEDYTSSSSPEKDNSVNINITQKKETTFDS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03397 234 Gene3D - 14 208 - -
Phco4g03397 234 SMART efh_1 68 96 IPR002048 GO:0005509
Phco4g03397 234 SMART efh_1 105 133 IPR002048 GO:0005509
Phco4g03397 234 SMART efh_1 149 177 IPR002048 GO:0005509
Phco4g03397 234 MobiDBLite consensus disorder prediction 207 234 - -
Phco4g03397 234 PRINTS Recoverin family signature 72 93 - -
Phco4g03397 234 PRINTS Recoverin family signature 10 24 - -
Phco4g03397 234 PRINTS Recoverin family signature 119 137 - -
Phco4g03397 234 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Phco4g03397 234 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Phco4g03397 234 CDD EFh 105 174 IPR002048 GO:0005509
Phco4g03397 234 FunFam calcineurin B-like protein 3 14 207 - -
Phco4g03397 234 Pfam EF hand 72 91 IPR002048 GO:0005509
Phco4g03397 234 Pfam EF hand 150 174 IPR002048 GO:0005509
Phco4g03397 234 ProSitePatterns EF-hand calcium-binding domain. 77 89 IPR018247 -
Phco4g03397 234 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Phco4g03397 234 SUPERFAMILY EF-hand 16 190 IPR011992 -
Phco4g03397 234 PANTHER CALCINEURIN B 2 206 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03397 Phco-Chr4 54291148 54293295 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03397 4 54291148 54293295 Phco4g03397 4 54291148 54293295 ECH