Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03386 ATGGAGTCATGGTGTGAAGAATTGCGGGTGGGGAAAATTAATGGGCAAAAGTGTCTTTTCGGTATAACCGTAACAGCAAACAGAAGCGCGGTGTACCAAACAAACACCCGCGTCTTGGGCTTGGAGCCGCTTTCTGTTTCAATTTCCAGCGAGGAAAGTGTTGATCCTCAAAAACCCTTCTCTGTCTGGAATATTAGGGTTGGTAAATCAGCAACATGTGTTGATCTGAGTTTCTGCTTGTTTCTTGGCTTGAGGTGTGTTTTTGATTGCCCTCCTTTCTTCTTGTTGAAGGTAAATTTAATGGATGATGGTCCTCCGAAACTAAAAATCATCCCTGATCACTTTCAAGTTCCAACATCAAGTTTAGAATCCCCTGAGAGCAGAACATCATCTATTACAGAGCCTGGAACTGATCAATCTTCAAGGTCCTCACGTCATCAACGGACTCGAAGGAAATTAAGGACAGCTTTCATGTTGAACTTGTTTTCTCCTAGGCGACTGTCATGGGGTTCCACTACTGGAGGTCAGGAAAAGGTTGAGCTAACAGCTGCAGAAGTAGAATCACTTCGATCAGAACTTGCTGATATAGAGGAGAGGGAAGCTCACTTGAAAGCTCAGTTGGAACATATTGATGAAGTTTTGCGGTCCGCTCGTTTATCTGGATATTTGTACATTCGAACTAGATGGGCAGCACTACCAGGAGAACCTGCACCTATAGATGATACTGAAGTAGATGATAGGCTTCCTCGTTTTGTCGTTCTCCACGGAGCATGTATATTTTTATATCTGTTGTGTACAGATCTAAGCCCCCAGGACTCAACCCTTCTATCTGATATCATTGAAGTAGGGAGTTTACCATGTTTTAAGCAAGAAGATGATGAAATTCAATATGCCTTTTATATTTTAACTCGTCATGGATTGCGATATGAATGCTCAAGCAATTCTAAGATACAGGTGGACTCTTGGTTATCAGCTTTACAAAGGGAATGCAAATTGGAACATGATACATTTTGTAAAGCTGACAGCAAACTGGAATCTGATACTTCAGTTCCCAATGGTTCGATTGAGATATCCTTCTTCATCCTCACATACTTGTGTGTTCTCTTCTTCTTCTCAGCCACTGCGAACAATCTAGTCCAAGCCAAGAAGATGGCCTCACAGGTTTGCAAATCTGCTTCCAGAGCCGCGAGGTCCTTTCTCTCTGCTTCCAAAGCCTCTCGTTTTCACTCTCAAGGACGTGCGGTTGGGGCTGCGACGGCGGTTTCATTGAGCACCAAAGTGCCTCTTTTGTTCTCGAATTATGGGAGGGGCGGTTCTGGAAGTGGATCCTCATCATCATGGATTTCAGGAGCCCTCGCTCTTCCTGCTGCAGCTTACATGTTCCAAGATCAGGAGGTGCACGCAGCTGAGCTGGAGCGCACTTTCATTGCCATCAAGCCTGATGGAGTGCAGAGAGGGCTGATTTCTGAGATTATATCTCGTTTTGAGCGAAAGGGGTACAAGCTTGTGGGAATTAAAGTAGTGATCCCTTCAAAGGAATTCGCCAAACAGCACTATCACGACCTGAAAGAAAGACCCTTCTTCGATGGGCTGTGTGATTTCCTAAGCTCTGGCCCTGTTATTGCAATGGTGTGGGAAGGACAGGGAGTTATTTCCTATGGCAGAAAGCTAATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATTAGGGGTGATCTGGCTGTTGTTGTTGGAAGAAATATAATCCATGGGAGTGATGGTCCCGAGACTGCCAAGGATGAGATTAAGTTGTGGTTTAAGCCAGAGGAGTTGGTTCGTTTCAGTAGCACTGCAGAGAAGTGGGTTTATGGTAGCAATTGA 1866 0.4469 MESWCEELRVGKINGQKCLFGITVTANRSAVYQTNTRVLGLEPLSVSISSEESVDPQKPFSVWNIRVGKSATCVDLSFCLFLGLRCVFDCPPFFLLKVNLMDDGPPKLKIIPDHFQVPTSSLESPESRTSSITEPGTDQSSRSSRHQRTRRKLRTAFMLNLFSPRRLSWGSTTGGQEKVELTAAEVESLRSELADIEEREAHLKAQLEHIDEVLRSARLSGYLYIRTRWAALPGEPAPIDDTEVDDRLPRFVVLHGACIFLYLLCTDLSPQDSTLLSDIIEVGSLPCFKQEDDEIQYAFYILTRHGLRYECSSNSKIQVDSWLSALQRECKLEHDTFCKADSKLESDTSVPNGSIEISFFILTYLCVLFFFSATANNLVQAKKMASQVCKSASRAARSFLSASKASRFHSQGRAVGAATAVSLSTKVPLLFSNYGRGGSGSGSSSSWISGALALPAAAYMFQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVVIPSKEFAKQHYHDLKERPFFDGLCDFLSSGPVIAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVRFSSTAEKWVYGSN 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03386 621 ProSitePatterns Nucleoside diphosphate kinases active site. 582 590 IPR023005 -
Phco4g03386 621 Pfam Nucleoside diphosphate kinase 472 605 IPR034907 -
Phco4g03386 621 CDD NDPk_I 472 601 - -
Phco4g03386 621 Gene3D - 467 621 IPR036850 -
Phco4g03386 621 SMART ndk_5 471 608 IPR034907 -
Phco4g03386 621 PANTHER OS05G0595500 PROTEIN 97 602 - -
Phco4g03386 621 SUPERFAMILY Nucleoside diphosphate kinase, NDK 471 618 IPR036850 -
Phco4g03386 621 MobiDBLite consensus disorder prediction 118 142 - -
Phco4g03386 621 SUPERFAMILY PH domain-like 211 330 - -
Phco4g03386 621 FunFam Nucleoside diphosphate kinase 467 619 - -
Phco4g03386 621 PRINTS Nucleoside diphosphate kinase signature 538 555 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Phco4g03386 621 PRINTS Nucleoside diphosphate kinase signature 559 575 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Phco4g03386 621 PRINTS Nucleoside diphosphate kinase signature 582 601 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Phco4g03386 621 PRINTS Nucleoside diphosphate kinase signature 518 537 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Phco4g03386 621 PRINTS Nucleoside diphosphate kinase signature 474 496 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Phco4g03386 621 Coils Coil 179 213 - -
Phco4g03386 621 MobiDBLite consensus disorder prediction 118 150 - -
Phco4g03386 621 Hamap Nucleoside diphosphate kinase [ndk]. 471 606 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03386 Phco-Chr4 54214114 54226485 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03386 4 54214114 54226485 Phco4g03386 4 54214114 54226485 ECH