Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03299 ATGGCGTTATCATTTCTCCGTGTTCCAGGCTTGCTTTCTCCAACTCCTACACCTGCAACTGCAACTGCAACTGCAACTGCAACTACTGCAACCACAACATCCACTGTAGTAAAGTTCCAACACTTTCGCAAACCTTGTAACTTCACACCCTTCTTTCGCTCTTCAATTTTATGTCCCTTGGTTCGGGCCATTGGGCGTGATGGAAGGTTCTACCCAACCCCAGCCGACGACGACCCACCGGAGGCTGCCGAGGACTCCTCCCATGGCTTCTCTACCTTCCAACAAATCCATCACCAAGCGGAACGCGCGCGCCAAATCGAAGAGGAAGACTACAAGAACAACCAGGCCACGTACCTCGCCGCCATCGCCGACGTCGAAGATGCCCCCGATAACGTCGACTTCGACACCTCTGGCGACGACATCTTCGGCGATATCGATAAAGCCATCGCGCTCAAGCGAAAGGAGTTCGTCTCCCAAGGCCTTCTTGAGCCGAATCCCCCCAAACAAGACCAGCTCGCCGCCGCAGCCGTGGATGAACTTCAGGCGGAGGAGCTCGGCGATTTGGAGGAAATTGAACGGCTCCAGGGACTCACCGGTAATGGTAATGGAGGCTTGAGTGAATCTCCGTTTGAATTGGATTTTGACAGTTACGGGAAAAGTAAGGTTAGGATTGTAGACGGAAAGTTTAAGATGAGTTTGGCTGAGCTTTTAGACGAGAGTAAGGTCGTGCCGGTGTCGGTTTCCGGTGATTTGGAAGTCGAAATCACCGGAATTCAGCACGATTCACGGATTGTTAATTCCGGTGATTTGTTTGTGTGCTGTGTTGGGCGAAAAACCGATGGACATTTGTTTCTTTCTGAGGCTGATAAGAGAGGTGCTGTTGCGGTTGTGGCTAGTAAAGAGGTTGATATTGAGGATACTTTGGGGTGTAAGGCTTTGGTTATTGTGGAAGATACTAATGCTGTCCTTCCTGCTTTGGCTGCGTCGTTTTATAAACATCCTTCAACTAAAATGGCTGTGATAGGGATAACTGGGACTTATGGCAAAACGACCACCACTTGTTTGATTAAAAGTTTGTATGAATCCATGGGAATGCGCACTGGGATGTTGAACTCGGTTGCCTCTTTTGTCCACGGGGATAATAAGTTGGAGTTGGGTAGCGCGGCGTTGGATGCTGTTTTGGTTCAGAATTTGATGGCGAAGATGACTCACAATGGGACGGAGGCGGTGGTCATGGAGGCTGGTTCTCATGGGCTGGGGAAGGGGAAGTATGATGAGGTTGATTTTGATATCGCTGTTTTCACTAATTTGAGTCAAGAGAAGGACGGCGACAGAGATGCGCAGGCTAAGTTGTTCTCGAGAATGGGGGATCCTGAGAGGCATAGGAAGGTTGTTAACATTGATGATCCGAATGCGCCCTTTTTTTTGTCGCAGGGGAGCCAGGAGGTTCCTGTTGTGACGTTTGCGATGGAGAATAGGGATGCAGATGTTCATCCCTTGAAGTTTGAACTTTCATTGTTTGAGACACAGGTGTTGGTTAATACTCCCACAGGGATACTGGAGATTTCTTCAGGTTTGCTTGGGAAGCATAATATTTACAACATTCTTGCGGCTGTAGCGGTTGGGATTGCTGTTGGGGCGCCCTTAGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCGGTTCCTGGGAGGTGTGAGTTGATTGATGAGGAACAGGCGTTTGGGGTGATAGTGGACCATGCCAGTACTCCTGATGCATTGTCTAGACTGCTTGATTCTGTAAGAGAGCTAGGACCTCGCAGGATCATAACTGTCATTGGATGCTGTGGTGAGGACGACCGGGGTAAGAGACCTGCTTTGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAAAATGAAGACCCTTTGGATATATTGGATGATATGTTATCTGGGGTAGGATGGTCAATGCATGACTACCTCAAATATGGAGAAAATGACTATTATCCACCTCTTCCAAATGGTCATAGACTTTTTCTCCATGACATTAGGAGAGTAGCTGTGCGAGCCGCGGTTGCAATGGGAGAGGAGGGCGATGTGGTTGTGGTTACTGGCAAAGGCCATCAAGCATATCAAATAGAAGGTGATAAGAAGGAGTTCTTTGACGATCGAGAAGAGTGCCGAGAGGCATTGCAGTACGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGAGGTTACCAGAAAGCCATTGA 2274 0.4837 MALSFLRVPGLLSPTPTPATATATATATTATTTSTVVKFQHFRKPCNFTPFFRSSILCPLVRAIGRDGRFYPTPADDDPPEAAEDSSHGFSTFQQIHHQAERARQIEEEDYKNNQATYLAAIADVEDAPDNVDFDTSGDDIFGDIDKAIALKRKEFVSQGLLEPNPPKQDQLAAAAVDELQAEELGDLEEIERLQGLTGNGNGGLSESPFELDFDSYGKSKVRIVDGKFKMSLAELLDESKVVPVSVSGDLEVEITGIQHDSRIVNSGDLFVCCVGRKTDGHLFLSEADKRGAVAVVASKEVDIEDTLGCKALVIVEDTNAVLPALAASFYKHPSTKMAVIGITGTYGKTTTTCLIKSLYESMGMRTGMLNSVASFVHGDNKLELGSAALDAVLVQNLMAKMTHNGTEAVVMEAGSHGLGKGKYDEVDFDIAVFTNLSQEKDGDRDAQAKLFSRMGDPERHRKVVNIDDPNAPFFLSQGSQEVPVVTFAMENRDADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDHASTPDALSRLLDSVRELGPRRIITVIGCCGEDDRGKRPALTKIATDKSEVTMLTSDNPKNEDPLDILDDMLSGVGWSMHDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVTGKGHQAYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03299 757 SUPERFAMILY MurE/MurF N-terminal domain 231 334 IPR035911 -
Phco4g03299 757 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 253 734 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Phco4g03299 757 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 567 740 - -
Phco4g03299 757 Gene3D - 334 565 IPR036565 GO:0005524|GO:0009058
Phco4g03299 757 Pfam Mur ligase middle domain 343 541 IPR013221 GO:0005524|GO:0009058|GO:0016881
Phco4g03299 757 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 231 733 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Phco4g03299 757 MobiDBLite consensus disorder prediction 71 92 - -
Phco4g03299 757 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 562 734 IPR036615 GO:0009058|GO:0016881
Phco4g03299 757 Gene3D - 232 332 - -
Phco4g03299 757 Pfam Mur ligase family, glutamate ligase domain 562 645 IPR004101 GO:0009058|GO:0016881
Phco4g03299 757 Gene3D - 567 744 IPR036615 GO:0009058|GO:0016881
Phco4g03299 757 PANTHER MUR LIGASE FAMILY MEMBER 188 743 - -
Phco4g03299 757 Pfam Mur ligase family, catalytic domain 254 331 IPR000713 GO:0009058|GO:0016881
Phco4g03299 757 SUPERFAMILY MurD-like peptide ligases, catalytic domain 314 573 IPR036565 GO:0005524|GO:0009058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03299 4 53508868 53512775 Phco4g03299 4 53508868 53512775 ECH