Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03278 ATGGTGTTAGAAATGGGAAGTAAATTTGTAGCGTTAGCTTGCTTCCGTAACAATGAGGGTTCGGGTAACCTTTCACCTCGTTCTCATTATCCATCCATGCCGAGATATCCAAAAGGTGTGACGGAAGAAGAAGGAAGCAGCAACGTTTTGCTCAAAGCACTTTTCTCAGTCACCGGAATGACTTGTTCCGCCTGTGCTGCTTCTGTCGAGAAAGCTGTCAAACGTCTTCCTGGCATTCGTCAAGCTCTTGTTGATGTTCTCAACAATCGCGCTCAGATCCTCTTCTACCCATCCTTTGTTAATGAAGAGACCATTCGCGAGGCCATTGAAGATGCTGGATTCCAAGCCACATTAATCAGAGATGATAACGAGACATCTGTTCAGATATGCCGCATACGTATCCAAGGCATGACATGCACATCGTGTTCCTCCACTGTTGAGTCTGCACTTCAATCAATCCAAGGAGTGGTGAAAGCCCAAGTGGCCCTTGCAACTGAGGAAGCTGAAGTTCACTACACTCCAAACGTTGTCACCTACAACCAAATCTTGGAAGCTGTAGAAGACACTGGTTTTCAAGCCACGCTTATCAGCACAGGTGAAGACATGAGCAGAATAGACCTTCAGGTAGAGGGCATAAGGACGGGTCGTTCCATGAGACTAATTGAAAATTCTCTTCAAGCCCTTCCTGGAGTCCAAGGTGTAGAAACACACCCTTTGTTGAACAAAGTGTCTCTTTCTTATAAACCAGACCTGACAGGACCAAGAAATTTCATTAACGTGATTGAAGAAACCGGGTCTAGGCGTTTCAAGGCAAAGATTTTCCCGGAAGGAGGGAGAAGGAATAGTCATAGGAGGGACGAAATCAAGCAATACTATAGATCCTTCTTGTGGAGTTTGGTTTTTACTATTCCTGTGTTTCTAACCTCCATGGTGCTTATGTATATCCCTGGAATTAAGCATGGACTAGATGCCAAAGTTGTTAAAATGCTTACAGTGGGGGAGATAATAAGATTGGTGCTTGCTACACCAGTACAGTTCATTATAGGGAAGAGGTTTTACTCTGGTGCTTACAAAGCATTACGCCTTGGCTCTCCCAACATGGATGTTTTGATTGCCTTGGGGACAAACGCAGCATACTTTTACTCAGTGTATTCTGTGCTGAGAGCTGCTACATCTAATGGTTTCAAGGGTACTGATTTCTTTGAGACCAGTGCTATGCTTATTTCGTTTATTTTGCTAGGAAAGTACCTTGAGGTTTTGGCCAAGGGGAAGACATCCGATGCAATTGCCAAGCTCATGAACTTGACACCTGACACTGCTATATTGTTGACGTTGGACAGTGAAGGAAATGTTGTTGGTGAGGAGGAAATTGATAGCAGGTTGATTCAGAAGAATGATGTCATTAAGATCATTCCTGGTGCAAAAGTGGCTTCCGATGGATTTGTTATTTGGGGTCAGAGCCACGTGAATGAGAGCATGATAACAGGTGAGGCACGTCCTGTGGCAAAGAGGAAAGGGGATACTGTTATTGGAGGAACTGTGAATCAAAATGGAGTGTTGCATATTAAGGCTACATGGGTGGGATCAGAGAGTGCGCTTGCTCAGATTGTCAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCTATGGTTATTGTAATCTCATTTTCAACTTGGCTTGCCTGGTTTATAGCTGGAAGGGTTAGTGCTTACCCGAAGTCTTGGATACCATCTTCCATGGATAGCTTTCAGCTTGCTTTGCAGTTTGGGATTTCTGTCATGGTCATAGCCTGTCCATGTGCTTTAGGTTTAGCAACACCAACTGCAGTCATGGTTGGTACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCGTTGTATTTGACAAGACAGGTACTCTCACTATCGGGAAGCCTGTGGTAGTAAATACAAAGTTGTTAACAAATATGGTACTCCGAGAATTCTATGAACTTGTGGCTGCAGCTGAGGTGAATAGTGAGCATCCCCTGGCGAAGGCCACTGTTGAGTATGCTAAAAGACTGAGAGATGAAGAGAACCCCATTTGGCCTGAGGCACGGGATTTTGTGTCCATTGCTGGACATGGAGTTAAGGCCATGGTTAGAAATAAGGAAATACTTGTGGGTAACAAGACCTTGATGGCGGACCACAATGTTGCACTTCCTGCTGATGCTGAAGAGATACTGGCAGAAGCTGAAGCAATGGCTCAAACTGGAATTCTAGTGTCTATAAATAGGGAAGTAGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCAGCTGCACAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTTACTGGGGACAATTGGGGAACTGCCAATTCTATAGCAAGGGAAGTTGGAATTGAAACTGTTATTGCTGAAGCCAAACCTGGGCAGAAGGCTGAGCAAGTGAAGGACTTGCAGGCTTCTGGGCAAAGGGTGGCTATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATAGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTAATGAAGAGCAATTTGGAGGATGTCATAACTGCCATTGATCTTTCCAGAAAAACGTTTTCCCGTATCCGTCTCAACTACATATGGGCGTTGGGCTATAATCTGCTAGGAATTCCAATTGCTGCTGGAGCTCTTTTTCCTTCTACACGATTTCGGTTGCCACCATGGGTTGCTGGGGCTGCCATGGCTGCCTCTTCTGTCAGTGTGGTTTGCTGTTCTCTACTATTGAAGTATTATAGGAGACCCAAGAAGCTGGACAATCTTGAGATACGGGGCATAAGCATTGAGTGA 2964 0.4484 MVLEMGSKFVALACFRNNEGSGNLSPRSHYPSMPRYPKGVTEEEGSSNVLLKALFSVTGMTCSACAASVEKAVKRLPGIRQALVDVLNNRAQILFYPSFVNEETIREAIEDAGFQATLIRDDNETSVQICRIRIQGMTCTSCSSTVESALQSIQGVVKAQVALATEEAEVHYTPNVVTYNQILEAVEDTGFQATLISTGEDMSRIDLQVEGIRTGRSMRLIENSLQALPGVQGVETHPLLNKVSLSYKPDLTGPRNFINVIEETGSRRFKAKIFPEGGRRNSHRRDEIKQYYRSFLWSLVFTIPVFLTSMVLMYIPGIKHGLDAKVVKMLTVGEIIRLVLATPVQFIIGKRFYSGAYKALRLGSPNMDVLIALGTNAAYFYSVYSVLRAATSNGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNQNGVLHIKATWVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPMVIVISFSTWLAWFIAGRVSAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLLTNMVLREFYELVAAAEVNSEHPLAKATVEYAKRLRDEENPIWPEARDFVSIAGHGVKAMVRNKEILVGNKTLMADHNVALPADAEEILAEAEAMAQTGILVSINREVVGVLAVSDPLKPAAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIETVIAEAKPGQKAEQVKDLQASGQRVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTRFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLEIRGISIE 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03278 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 395 933 IPR023298 -
Phco4g03278 987 Gene3D - 203 265 - -
Phco4g03278 987 SUPERFAMILY HMA, heavy metal-associated domain 51 122 IPR036163 GO:0046872
Phco4g03278 987 FunFam Copper-transporting ATPase HMA5 51 121 - -
Phco4g03278 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 656 662 IPR018303 -
Phco4g03278 987 MobiDBLite consensus disorder prediction 22 41 - -
Phco4g03278 987 FunFam Copper-transporting ATPase 1, putative 422 544 - -
Phco4g03278 987 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Phco4g03278 987 CDD HMA 55 117 IPR006121 GO:0046872
Phco4g03278 987 Pfam E1-E2 ATPase 453 632 - -
Phco4g03278 987 PRINTS Copper-transporting ATPase 1 signature 52 77 - -
Phco4g03278 987 PRINTS Copper-transporting ATPase 1 signature 152 173 - -
Phco4g03278 987 PRINTS Copper-transporting ATPase 1 signature 107 127 - -
Phco4g03278 987 PRINTS Copper-transporting ATPase 1 signature 78 101 - -
Phco4g03278 987 ProSiteProfiles Heavy-metal-associated domain profile. 203 269 IPR006121 GO:0046872
Phco4g03278 987 FunFam Probable copper-transporting ATPase HMA5 752 915 - -
Phco4g03278 987 Gene3D - 621 915 IPR023214 -
Phco4g03278 987 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 5 983 - -
Phco4g03278 987 Pfam Heavy-metal-associated domain 132 191 IPR006121 GO:0046872
Phco4g03278 987 Pfam Heavy-metal-associated domain 55 114 IPR006121 GO:0046872
Phco4g03278 987 SUPERFAMILY Calcium ATPase, transduction domain A 454 540 IPR008250 -
Phco4g03278 987 Gene3D - 739 789 IPR023299 GO:0000166
Phco4g03278 987 Gene3D - 661 738 IPR023299 GO:0000166
Phco4g03278 987 NCBIfam HAD-IC family P-type ATPase 407 939 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco4g03278 987 SUPERFAMILY HMA, heavy metal-associated domain 198 266 IPR036163 GO:0046872
Phco4g03278 987 FunFam Copper-transporting ATPase HMA5 127 198 - -
Phco4g03278 987 PRINTS P-type cation-transporting ATPase superfamily signature 490 504 - -
Phco4g03278 987 PRINTS P-type cation-transporting ATPase superfamily signature 805 815 - -
Phco4g03278 987 PRINTS P-type cation-transporting ATPase superfamily signature 858 877 - -
Phco4g03278 987 PRINTS P-type cation-transporting ATPase superfamily signature 654 668 - -
Phco4g03278 987 PRINTS P-type cation-transporting ATPase superfamily signature 881 893 - -
Phco4g03278 987 PRINTS P-type cation-transporting ATPase superfamily signature 783 794 - -
Phco4g03278 987 ProSiteProfiles Heavy-metal-associated domain profile. 128 194 IPR006121 GO:0046872
Phco4g03278 987 CDD P-type_ATPase_Cu-like 293 968 - -
Phco4g03278 987 SFLD p-type atpase 636 910 IPR044492 -
Phco4g03278 987 ProSitePatterns Heavy-metal-associated domain. 57 86 IPR017969 GO:0046872
Phco4g03278 987 NCBIfam heavy metal translocating P-type ATPase 367 967 IPR027256 GO:0006812|GO:0016020|GO:0019829
Phco4g03278 987 Gene3D - 422 544 - -
Phco4g03278 987 ProSiteProfiles Heavy-metal-associated domain profile. 51 117 IPR006121 GO:0046872
Phco4g03278 987 CDD HMA 132 194 IPR006121 GO:0046872
Phco4g03278 987 SUPERFAMILY HMA, heavy metal-associated domain 127 199 IPR036163 GO:0046872
Phco4g03278 987 SFLD C1.7: P-type atpase like 636 910 - -
Phco4g03278 987 NCBIfam copper ion binding protein 54 116 IPR006122 GO:0005507
Phco4g03278 987 NCBIfam copper ion binding protein 132 193 IPR006122 GO:0005507
Phco4g03278 987 Gene3D - 51 123 - -
Phco4g03278 987 Gene3D - 128 200 - -
Phco4g03278 987 SUPERFAMILY HAD-like 653 964 IPR036412 -
Phco4g03278 987 Pfam haloacid dehalogenase-like hydrolase 650 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03278 Phco-Chr4 53346943 53354144 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03278 4 53346943 53354144 Phco4g03278 4 53346943 53354144 ECH
Phco4g00323 4 2059700 2063865 Phco4g03278 4 53346943 53354144 PCT