Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03238 ATGGATTCAATTAACAACCTACTCAACCTTGCATTGCCTCCACTTTTCCTAATATTCCTCTCCCTTTTAGTGTTACCTTCGCTGATATTCAAGCAGCTTATTCATGTAAGAAAATCGATATACAAAGAAAACGTTGCAAGAAAAGTTATATTAATCACTGGAGCAGCTTCAGGAATTGGCGAGGAAATAGCGTATGAATATGCAAGGCGAGGAGCAAAGCTTTCCCTGGTTGACATAAGAAAGGAGAAACTAGAGGTAGTGAGTGATAAGGCACGATCTCTGGGTTCTCCTGATGTTACCATCATTGGTGCTGATGTGTCCAAAGTTCAAGACTGCAAACGCTTTGTTGATGAAACTATCAACTACTTTGGAAGACTGGATCATCTGGTAAATAATGCGGGAATCAGCGGCAAGCCTGTGACAGTGGAGAATTTGCGTCATGTTTCCGACTGTGCTGCAGTTATGGATGTAAATTTTTGGGGAGCAGTCAATGCGACATTATATGCAATCCCACATCTAAAAATTAATAAAGGAAGAATCATAGTGATTGCTTCATTTTGCGGACGGTTTCCATTACCACGGCTAAGTATTTATAATGCGAGCAAAGCAGCGATAATAAGCTTCTTTGAGACTCTGAGAATGGAAGCTGCTTCTACCATCGGCATAACAATTGCCATGCCAGGTCTTATCAAGACAGACCTTACGAGGGCTGTCAAATCTGACTTTAAGGCTGCTATGGAAAAAGTTCGAATGGCGTCAGCTAGTGAGTGTGCTAAAGGCATAGTTGAAAGTGCATGCAGGGGAGATATGTATGTTACAGATCCATCCTGGTACAAAGTGTTGTTTCCTTGGAAGCTGCTTCATCCTCAGTTCGTAGATTGGGCCTGCAACTTCATCTGTGGGCTTTCTCCAGAGAAGTCTGCCACGAAACCCAATCTCATGATGCCAGACCATAAGGCAGAATAA 966 0.4244 MDSINNLLNLALPPLFLIFLSLLVLPSLIFKQLIHVRKSIYKENVARKVILITGAASGIGEEIAYEYARRGAKLSLVDIRKEKLEVVSDKARSLGSPDVTIIGADVSKVQDCKRFVDETINYFGRLDHLVNNAGISGKPVTVENLRHVSDCAAVMDVNFWGAVNATLYAIPHLKINKGRIIVIASFCGRFPLPRLSIYNASKAAIISFFETLRMEAASTIGITIAMPGLIKTDLTRAVKSDFKAAMEKVRMASASECAKGIVESACRGDMYVTDPSWYKVLFPWKLLHPQFVDWACNFICGLSPEKSATKPNLMMPDHKAE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03238 321 Pfam short chain dehydrogenase 48 240 IPR002347 -
Phco4g03238 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 296 IPR036291 -
Phco4g03238 321 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Phco4g03238 321 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Phco4g03238 321 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Phco4g03238 321 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Phco4g03238 321 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Phco4g03238 321 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
Phco4g03238 321 Gene3D - 30 302 - -
Phco4g03238 321 PANTHER RETINOL DEHYDROGENASE-RELATED 46 296 - -
Phco4g03238 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Phco4g03238 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Phco4g03238 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03238 Phco-Chr4 53037475 53040137 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03238 4 53037475 53040137 Phco4g03238 4 53037475 53040137 ECH