Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03186 ATGGGAGAACGGAAGCTAATCCCTCTTGGGATCTTTCTGCTCCTCTTGATTTCTGCCTCTTCTTTTCAGCTTCTCCGCGCCTCTGAAGATGCAGATGACGCGATCTTCTACGAGTCATTCGATGAGGATTTTGAAGATCGTTGGATCGTGTCTCAGAAAGATGAATATAGTGGTGTCTGGAAACATGCCAAGAGTGAGGGACATGATGATCATGGTCTTCTTGTCAGTGAGAAAGCAAGAAAATATGCTATAGTGAAGGAACTTGACGAGGCAGTGAGTCTCAAGGATGGAACTGTTGTTCTCCAGTTTGAAACTCGGCTTCAGAATGGACTTGAATGTGGTGGAGCATATATAAAATATCTCCGACCACAGGATGCTGGATGGAAATCTAAGGAATTTGACAACGAATCTCCGTATTCTATCATGTTTGGTCCTGATAAGTGTGGTGCCACAAACAAAGTACACTTCATTTTCAAACACAAGAATCCCAAGACTGGGGAGTATGTTGAGCACCATCTTAAGAATCCCCCTTCTGTCCCTTCTGACAAATTAACTCATGTGTACACGGCTATTTTGAAGCAAGACAATGAGGTGCAAATTTTGCTTGATGGGGAACAGAAGAAGAAGGCAAACTTCTTAAGTGCTGATGATTTTGAACCTCCACTTATCCCGACCAAGACAATCCCAGATCCTGATGATAAGAAGCCTGAGGACTGGGATGAGAGAGAGAAAATTCCAGACCCAATTGCAGTAAAGCCAGATGACTGGGATGAGGATGCACCCTTGGAAATTGTTGATGAAGAAGCTGAAAAACCTGAAGGATGGTTAGACGATGAACCTGAGGAGATAGATGATCCAGAGGCAACAAAACCAGAAGATTGGGATGATGAGGAGGATGGTGAATGGGAAGCCCCAAAGGTTGAGAACCCAAAATGTGAAGCCGCCCCAGGCTGTGGTGAGTGGAAAAGGCCAATGAAGTCGAATCCAGCCTATAAAGGAAAATGGTATGCCCCACTTATTGAAAATCCTGCTTATAAGGGTATATGGAAGCCTAGGGATATTCCAAACCCTGCTTACTTTGAACTTAAAAAACCTGATTTTGAGCCAATCGCTGCTATTGGTATTGAGATTTGGACAATGCAAGATGGCATTTTGTTTGACAACATCTTGATAGCTAAAGATGATAAAATTGCTGAGTCCTATCGGGAGACTACATGGAAACCCAAGTTTTCAGTTGAAAAAGAAAAACAGAAGGAAGAGGAAGCTGAAGCGGGATCAAGTGGTATTGCAGGCTTCCAGAAGAAGGTATTTGACCTCTTATACAAGATCGCAGACATCCCCTTCCTGAGTGCCTATAAGCCTAAAATCCATGATCTCATCGAGAAGGGTCAAGAGCAACCCAATCTCACAGTTGGAATTCTTGTAGCCATTTTGGTTGTCTTTGTGTCAGTTTTCTTCAGGATCATATTTGGTGGGAAAAAGAAGCCCACAAGGGTGGAGAAGACAAACTTAGAACCCTCCGAAAGTGCCTCTAACCAAACAAATGGTGAGAATGAAGAAAACAAAGAGAAGGAGGAATCATCTGCCCCTCCACGTCGGAGGTCAGCAAGGAGAGAGAACTGA 1623 0.4362 MGERKLIPLGIFLLLLISASSFQLLRASEDADDAIFYESFDEDFEDRWIVSQKDEYSGVWKHAKSEGHDDHGLLVSEKARKYAIVKELDEAVSLKDGTVVLQFETRLQNGLECGGAYIKYLRPQDAGWKSKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKTGEYVEHHLKNPPSVPSDKLTHVYTAILKQDNEVQILLDGEQKKKANFLSADDFEPPLIPTKTIPDPDDKKPEDWDEREKIPDPIAVKPDDWDEDAPLEIVDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKVENPKCEAAPGCGEWKRPMKSNPAYKGKWYAPLIENPAYKGIWKPRDIPNPAYFELKKPDFEPIAAIGIEIWTMQDGILFDNILIAKDDKIAESYRETTWKPKFSVEKEKQKEEEAEAGSSGIAGFQKKVFDLLYKIADIPFLSAYKPKIHDLIEKGQEQPNLTVGILVAILVVFVSVFFRIIFGGKKKPTRVEKTNLEPSESASNQTNGENEENKEKEESSAPPRRRSARREN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03186 540 PANTHER CALRETICULIN AND CALNEXIN 14 525 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Phco4g03186 540 MobiDBLite consensus disorder prediction 228 258 - -
Phco4g03186 540 MobiDBLite consensus disorder prediction 259 303 - -
Phco4g03186 540 MobiDBLite consensus disorder prediction 498 540 - -
Phco4g03186 540 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 242 IPR013320 -
Phco4g03186 540 ProSitePatterns Calreticulin family repeated motif signature. 283 295 IPR018124 GO:0005509
Phco4g03186 540 FunFam Calnexin homolog 221 366 - -
Phco4g03186 540 PRINTS Calreticulin signature 108 126 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Phco4g03186 540 PRINTS Calreticulin signature 137 153 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Phco4g03186 540 PRINTS Calreticulin signature 283 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Phco4g03186 540 PRINTS Calreticulin signature 235 248 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Phco4g03186 540 PRINTS Calreticulin signature 340 359 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Phco4g03186 540 PRINTS Calreticulin signature 372 392 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Phco4g03186 540 Gene3D Calreticulin/calnexin, P domain 221 365 IPR009033 GO:0005509|GO:0005515
Phco4g03186 540 MobiDBLite consensus disorder prediction 212 304 - -
Phco4g03186 540 ProSitePatterns Calreticulin family signature 2. 141 149 IPR018124 GO:0005509
Phco4g03186 540 Pfam Calreticulin family 36 391 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Phco4g03186 540 MobiDBLite consensus disorder prediction 517 540 - -
Phco4g03186 540 SUPERFAMILY P-domain of calnexin/calreticulin 221 361 IPR009033 GO:0005509|GO:0005515
Phco4g03186 540 FunFam Calnexin homolog 36 216 - -
Phco4g03186 540 ProSitePatterns Calreticulin family signature 1. 106 121 IPR018124 GO:0005509
Phco4g03186 540 Gene3D - 36 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03186 Phco-Chr4 52585340 52588671 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03186 4 52585340 52588671 Phco4g03186 4 52585340 52588671 ECH