Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03098 ATGAACGAATCTCAAAACACCATTCCTCCCCTATTCAGATGCCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCTGGCAACCTCACATGTCCAGTCACAATGCAAAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGGGTCCCCTATTCGACCCTGCCAACCCAGAAACTTCAACTATTGACTCCTTAGCTTCTCTCAAGCGCAACCTTGAATCCCATGAAAGCAGCTTAGAAAACAAGCTCCAAGCACTCAGGAAAATTAGTCTCTTGTCTGATGAGTATTGCTCCTTTAACAAATCATGCTTCCTCCAATTGGACTTCTTACCGCTGCTTTTGGAACTAGTTTTTGGAACTCAAGTATCAATAAATCACATGAACTTCATAGAGCTAGCACTTTTCTGCATTCAGAAATTGCTGCCACTGGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGGATCTAAATTAGCCATGTTTGTGCTACTAATTGAAAAGGGTACTAACTCGGTTAAGACTAGCTTGTGCCGTGTTATAGAGTCAGCATCATCCTCATCGGAGACAGAAGATTTATGCTATATTCTTGGAAACTCTCCCAAACTAGTGCACGAGATTGTTGAAGTTGTTAACCAAAATTACGAAGTTTCTGGGGATGCAATCAAAGCCATGTCAGCACTATGTTCGTTTCAATCCAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATAGATGGTATCATGAGATACATCTCATCAGAAAGAAGAACCATGGCCCCACTGGCAGTGAGAACAGTTGAGAAACTTATGGCGCTGGAAAGTGCTAAAGTGGCATTGGTGAATCACCCCGATGGTGTTCGTATTTTGGTTAATATGGTTTTCAAGGTATCTGATCAAGAATGCAGTGAAAGTGCTGTTGAGGTGCTTTTAGTTGTTTGTGGTGAATTTGAGCGTGCAAGAGAGACAGCCATTGAAAGTGGAGTTTTGACTCGGTTGTTACTGCTCCTGCAGAGTCAGAGTAGTAACAAAACAAAATCAAAGGCAAGATTGCTACTCAAATTGCTCAGATCAGAGTCAAAGCAGGGTTAG 1173 0.4254 MNESQNTIPPLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPANPETSTIDSLASLKRNLESHESSLENKLQALRKISLLSDEYCSFNKSCFLQLDFLPLLLELVFGTQVSINHMNFIELALFCIQKLLPLGSLEPLNMIKDGSKLAMFVLLIEKGTNSVKTSLCRVIESASSSSETEDLCYILGNSPKLVHEIVEVVNQNYEVSGDAIKAMSALCSFQSNRESLVRGGAIDGIMRYISSERRTMAPLAVRTVEKLMALESAKVALVNHPDGVRILVNMVFKVSDQECSESAVEVLLVVCGEFERARETAIESGVLTRLLLLLQSQSSNKTKSKARLLLKLLRSESKQG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03098 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Phco4g03098 390 Gene3D - 187 389 IPR011989 -
Phco4g03098 390 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Phco4g03098 390 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Phco4g03098 390 SUPERFAMILY ARM repeat 96 383 IPR016024 -
Phco4g03098 390 CDD RING-Ubox_PUB 9 56 IPR045210 -
Phco4g03098 390 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Phco4g03098 390 PANTHER WDSAM1 PROTEIN 6 388 IPR045185 GO:0061630
Phco4g03098 390 Coils Coil 94 118 - -
Phco4g03098 390 SUPERFAMILY RING/U-box 4 76 - -
Phco4g03098 390 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03098 Phco-Chr4 51928429 51929601 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03098 4 51928429 51929601 Phco4g03098 4 51928429 51929601 ECH