Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco4g03083 | ATGAAGGGTGGCACGGTTCAGATTAACTGGCACGATGACAAACCCGTCTTAACCCTCGATTTCCACCCTCTCTCCGCCACTCTCGCCACCGCCGGCGCCGATTTTGACATCAAGTTTTGGTCGATAAAACCCGCCGGGACGCAGAAGCTTCCCGTGGTTTCCTATCTTAGTAACCTCTCTTACCATAGCACTGCAGTGAATGTTATTCGCTTCTCTTCTTCGGGGGAATTGCTGGCCTCTGGTGCTGATGGAGGGGACCTGCTAATATGGAAGCTACATTCTGCCGATACTGGTCAGACATGGAAGGTTCTCAAGATGTTACGATCTCATCTCAAGGACATTTTGGACCTGCAGTGGTCTACCGATGCCACATATATCATATCTGGATCAGTCGATAATAGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGAGACCCATGCGCACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGAAAATATGTTTCTTCTCTTAGTTCTGATAGGACTTGCAGAATTTACATGAATAAGCCTCATAAATCAAAGGGCACTGAGAAAATCAATTTTGTTTGCCAGCAAGTCATTTCTAAGGCAGATCATCCATTATTAAAAAATTCTCAGGAGACAAAATTTCACCTCTTCCATGATGAGACATTGCCATCTTTTTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTTTAATTGTGCCTGCAGGCTCTTACAAAATTAATAATGCATCCGAGTCTGTGAATGCTGCTTACATAATTTCTAGGAAAGATCTTTCTAGGCCTGCTATACAGCTCCCTTGTGCAAGCAAAGCTGTTGTAGCGGTCCGGTTCTGTCCCATAATTTTTAAACTTCAGGGAACGAACTCACTCAACTCAGCTGGGGTATTCAACCTCCCATATCGCATCATATTTGCTGTGGCCACTTTGAATTCACTGTACATTTATGATACCGAGAGCACATCTCCCTTAGCTGTATTAGCTGGTCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCATCACAAGATGGTTTCTGCTCTTTGGTGGAGTTTGAGAATGACGAACTTGGATCACCTTACTCTTTATCTGAAGGAAAAGCCAAGGAGGATAGTGAGAGTAATTTACAGACAGGCAATGACACTGTAACACTAGACAAGCCTGACAACATGGTCATTGAGGCAACTGGGAATGTTGAAGGGGTTATAGCTGATAGTAGGAAAAATGAAGCAGAAGAGAAAACTGATGACATGATCATTGAAATAACTGGAATAATTGGCACTGCTGAATTAGATAGAAGAAAAGCGGAACCAGAAGATAAGGCAACGAAACAGCAATGGAATTCGTGTGCTGTAAATTTTGGAGCTCAAGACAAGGCTGAGAAACAGCCAGCTAATCCTGATTCTGACGGAAAACAAACGGAATCAAGGGAGAAGACAGCAACTCTGCAATCAAGTTTGGACGGTAAATCGGGTGCAGAAGAGAAGTCTGGGCAAAAATTTTCCAGTTCGAAGAGTACACCCTTGTCAAATAAGCCAGCCAAGAAGCGTATTACTCCTATTGCCATTGATCCATGA | 1632 | 0.4332 | MKGGTVQINWHDDKPVLTLDFHPLSATLATAGADFDIKFWSIKPAGTQKLPVVSYLSNLSYHSTAVNVIRFSSSGELLASGADGGDLLIWKLHSADTGQTWKVLKMLRSHLKDILDLQWSTDATYIISGSVDNSCIIWDVNKGTNLQTLETHAHYVQGVAWDPLGKYVSSLSSDRTCRIYMNKPHKSKGTEKINFVCQQVISKADHPLLKNSQETKFHLFHDETLPSFFRRLAWSPDGSFLIVPAGSYKINNASESVNAAYIISRKDLSRPAIQLPCASKAVVAVRFCPIIFKLQGTNSLNSAGVFNLPYRIIFAVATLNSLYIYDTESTSPLAVLAGLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGSPYSLSEGKAKEDSESNLQTGNDTVTLDKPDNMVIEATGNVEGVIADSRKNEAEEKTDDMIIEITGIIGTAELDRRKAEPEDKATKQQWNSCAVNFGAQDKAEKQPANPDSDGKQTESREKTATLQSSLDGKSGAEEKSGQKFSSSKSTPLSNKPAKKRITPIAIDP | 543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco4g03083 | 543 | Pfam | WD domain, G-beta repeat | 11 | 41 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | Pfam | WD domain, G-beta repeat | 59 | 91 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | Pfam | WD domain, G-beta repeat | 143 | 180 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | Pfam | WD domain, G-beta repeat | 102 | 139 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | SMART | WD40_4 | 100 | 139 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | SMART | WD40_4 | 329 | 369 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | SMART | WD40_4 | 52 | 91 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | SMART | WD40_4 | 3 | 41 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | SMART | WD40_4 | 142 | 181 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | MobiDBLite | consensus disorder prediction | 379 | 405 | - | - | |
| Phco4g03083 | 543 | MobiDBLite | consensus disorder prediction | 449 | 543 | - | - | |
| Phco4g03083 | 543 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 59 | 94 | - | - | |
| Phco4g03083 | 543 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 107 | 143 | - | - | |
| Phco4g03083 | 543 | Gene3D | - | 262 | 402 | IPR015943 | GO:0005515 | |
| Phco4g03083 | 543 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 59 | 100 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | MobiDBLite | consensus disorder prediction | 496 | 531 | - | - | |
| Phco4g03083 | 543 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 149 | 180 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | PRINTS | Beta G protein (transducin) signature | 163 | 180 | IPR001632 | - | |
| Phco4g03083 | 543 | PRINTS | Beta G protein (transducin) signature | 107 | 123 | IPR001632 | - | |
| Phco4g03083 | 543 | PRINTS | Beta G protein (transducin) signature | 126 | 140 | IPR001632 | - | |
| Phco4g03083 | 543 | Gene3D | - | 4 | 261 | IPR015943 | GO:0005515 | |
| Phco4g03083 | 543 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 16 | 43 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | MobiDBLite | consensus disorder prediction | 481 | 495 | - | - | |
| Phco4g03083 | 543 | FunFam | Chromatin assembly factor 1 subunit FAS2 | 4 | 249 | - | - | |
| Phco4g03083 | 543 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 126 | 140 | IPR019775 | - | |
| Phco4g03083 | 543 | SUPERFAMILY | WD40 repeat-like | 11 | 381 | IPR036322 | GO:0005515 | |
| Phco4g03083 | 543 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 107 | 148 | IPR001680 | GO:0005515 | |
| Phco4g03083 | 543 | PANTHER | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B | 1 | 543 | IPR045145 | GO:0006335 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco4g03083 | 4 | 51815493 | 51819206 | Phco4g03083 | 4 | 51815493 | 51819206 | ECH |