Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02188 ATGGCTGCTTCTCATTCCCATTTCCCATGTGGCTCAGGCGAGCATCTACCTCCTACTCGTCAATCTGCATCAAAAGTGTGTCGAGTTTGTAGTGATCAGATTGGACATGGGGAAGATGGGAAGCTGTTTGTGGCTTGTCATGTGTGTAGTTTTCCCGTTTGTCAACCCTGCTATGAGTATGAGAGGAGTGAAGGGAACCAATGCTGCCCTCAGTGCAACACCCGCTATAAACGCCATAATGGTTGTCCTAGAGTAGTTGGTGACGATGAAGAGCATTCTGATGCAGATGATTTTCATGATGATCCAGATGAGAAATATGATGCTAATCATTTGGAAAATAAAGACTACAAGGAACAGCAGTGGCATCAGAAAGGTCAAGCTTTCTCTTCAGCCGGAAGTGTGGCTGGTAAGGAATTTGAAGGGGAGAAGGAATTCTTCAGTAATGGAGAATGGGAAGAAAGATTAGAGCAATGGAAAGCCAGGCAAGAAAAGAGAGGTCTTCTAAACAAAGAGGAAGGCAAAGATGAGCAAGTAGAAGATGACTACGTTTTGGCAGAAGCTAGGCAACCGTTGTGGCGTAAGGTCCCAATATCTTCAAGTCTAATAAACCCATATCGCATAGTCATAATGATGAGGCTCTTTATCCTCGTTTTCTTCCTCCATTTCCGTGTCTTAACTCCAGCATATGATGCATATCCACTGTGGCTTGCGTCTGTGATATGTGAAGTATGGTTTGCACTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATCACTCGTGAAACTTACTTGGATCGCTTGTCCATGAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAAGAGCCTCCCATTATAACAGCAAACACTGTTCTTTCAATCCTGGCTGTTGATTACCCGGTTGAGAAGGTGTGCTGTTATGTATCTGATGATGGTGCATCTATGCTCCTTTTTGACGCACTTTCAGAAACTTCTGAGTTTGCACGAAGATGGGTTCCTTTTTGCAAGAAGTATAGCATAGAGCCAAGGGCACCTGAGTTCTACTTTTCTCAGAAGATTGATTACTTGAAAGATAAGGTTCTTCCTACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTAAAAATTAATTCCTTAGTGGCAAAAGCTCAGAAGAAGCCAGAGGAGGGGTGGGTGATGCAGGATGGTACCCCTTGGCCTGGGAACAATACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGGTGGTGCACTGGACGTAGAAGGCAAGGAACTGCCACGGCTAGTGTATATTTCACGAGAAAAGCGTCCTGGCTATAACCACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTTCGAGTTTCAGCTGTGCTTTCAAACGCACCATTCATGCTGAATCTAGATTGTGACCATTACATAAACAATAGCAAGGCTATAAGAGAAGCCATGTGCTTTTTAATGGACCCCCAGATAGGAAAGAAGCTCTGTTATGTCCAATTTCCACAAAGATTCGATGGTATTGATCGGCATGATAGATATGCTAATCGCAATATTGTATTCTTTGATATAAATATGAAAGCCCTTGACGGGATTCAGGGTCCAGTTTATGTTGGTACTGGATGTGTGTTCAATAGGCAGGCACTATATGGATATGATCCACCAGTATCTGAGAAAAGGCCAAAGATGACTTGTGACTGCTGGCCTGCTTGGTGTTGTTGTTGTTGTGGTGGTTCAAGGAAATCCAAGTCAAAGAAGAAATCAGGAGGAGGAGGAGGGGGTCTCTTAAGTAGATTATACACCAAGAAGAAGAAAATGATGGGGAAGAACTATGTTAGAAAAGGGTCTGAGTCCTTGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGATGAGCTAGAGAAATCATCCCTGATGTCCCAAAAAAAATTTGAGAAGCGATTTGGGCAGTCACCAGTTTTCATTGCATCCACTTTGATAGAAAAGGGTGGACTTCCTGAAGGCACTAATAGTCAATCACTAATAAAGGAAGCTATTCATGTTATAAGTTGTGGCTATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGATGGATATATGGCTCAGTCACAGAAGATATTTTAACAGGGTTTAAGATGCATTGTAGAGGATGGAAATCAGTATACTGCATGCCAAAAAGAGCAGCTTTCAAAGGATCTGCCCCAATAAATCTATCAGATAGGTTACACCAAGTTCTGAGATGGGCCCTTGGTTCTGTTGAAATTTTTCTTAGTCGCCATTGTCCATTGTGGTATGGCTATGGAGGAAAACTGAAATGGCTGGAGAGGTTGGCTTATACCAATACCATTGTTTATCCATTCACTTCCCTCCCTCTACTTGCATACTGCACAATTCCAGCAGTTTGTCTTCTTACTGGAAAATTCATCATCCCAACATTGACCAACCTTGCTAGTGTATGGTTCATGGCTCTGTTCATCTCCATCATTTTAACTGGTGTGCTTGAGCTGAGGTGGAGTGGTGTTAGCCTTGAAGACTGGTGGCGCAATGAACAATTTTGGGTGATTGGAGGTGTATCTGCTCACCTTTTTGCTGTATTCCAAGGTCTCCTTAAGGTTCTTGGAGGAGTGGACACCAATTTCACTGTCACAGCAAAAGCAGCAGATGATGCTGAATTTGGAGAGCTGTACCTGTTCAAGTGGACAACACTTCTCATCCCACCCACCACTCTTATAATCTTGAATATGGTGGGAGTTGTGGCTGGAGTCTCTGATGCCATTAACAATGGCTATGGTTCATGGGGTCCTTTGTTTGGGAAGCTATTCTTTGCCTTTTGGGTTATTGTCCACCTATATCCTTTCCTCAAAGGTCTCATGGGAAGGCAAAACAGGACTCCTACTATTGTTGTCCTTTGGTCAATTCTTCTAGCATCAATTTTCTCTTTGATTTGGGTTAGGATTGATCCTTTCTTGCCAAAACAAACTGGTCCAGTCCTCAAACAATGTGGAGTAGAATGCTAA 3093 0.431 MAASHSHFPCGSGEHLPPTRQSASKVCRVCSDQIGHGEDGKLFVACHVCSFPVCQPCYEYERSEGNQCCPQCNTRYKRHNGCPRVVGDDEEHSDADDFHDDPDEKYDANHLENKDYKEQQWHQKGQAFSSAGSVAGKEFEGEKEFFSNGEWEERLEQWKARQEKRGLLNKEEGKDEQVEDDYVLAEARQPLWRKVPISSSLINPYRIVIMMRLFILVFFLHFRVLTPAYDAYPLWLASVICEVWFALSWILDQFPKWFPITRETYLDRLSMRFEREGEPNLLAPVDVYVSTVDPLKEPPIITANTVLSILAVDYPVEKVCCYVSDDGASMLLFDALSETSEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVLPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSGGALDVEGKELPRLVYISREKRPGYNHHKKAGAMNALVRVSAVLSNAPFMLNLDCDHYINNSKAIREAMCFLMDPQIGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKALDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPAWCCCCCGGSRKSKSKKKSGGGGGGLLSRLYTKKKKMMGKNYVRKGSESLFDLEEIEEGLEGYDELEKSSLMSQKKFEKRFGQSPVFIASTLIEKGGLPEGTNSQSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSLPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSLEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02188 1030 Pfam Cellulose synthase 285 1023 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco4g02188 1030 MobiDBLite consensus disorder prediction 1 20 - -
Phco4g02188 1030 SUPERFAMILY RING/U-box 13 96 - -
Phco4g02188 1030 Coils Coil 383 403 - -
Phco4g02188 1030 MobiDBLite consensus disorder prediction 88 108 - -
Phco4g02188 1030 Pfam Zinc-binding RING-finger 18 92 IPR027934 -
Phco4g02188 1030 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 188 997 - -
Phco4g02188 1030 FunFam Cellulose synthase 10 101 - -
Phco4g02188 1030 CDD mRING-HC-C4C4_CesA 25 75 - -
Phco4g02188 1030 SUPERFAMILY Nucleotide-diphospho-sugar transferases 298 828 IPR029044 -
Phco4g02188 1030 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 402 577 IPR029044 -
Phco4g02188 1030 FunFam Cellulose synthase 402 576 - -
Phco4g02188 1030 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 101 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02188 Phco-Chr4 42561473 42566758 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02188 4 42561473 42566758 Phco4g02188 4 42561473 42566758 ECH