Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02130 ATGGATCTTCACGAGAACCCCCAGAATTCTGGCATGAAGAAACGAAAGCCGGAGCAGGATGATGCTTTGATCAGTGATCATGGAAATTCTATGAGTGTAGGAGAGTCATCTGGGAGCGGTGATAACAATCAAAATGGTTCCACTTCTGACATTTCATGTCCAGAAGATGAGGACATGATTGATGATGATGCAGATATGATTGATGATGATGATGCAGATGAAGATGCTGATTATGCTTTTGGTTACAATGATGATATTTATGAAGATGATTACTCAAGTATGCAGGATCAATTTGATAGTGTGGATTTACCTCCTGGGGTGGAGGCATCACTGCCTTGGTTGAAGGACATTTCTTCTAGTGAATGCAAGCAAGCTGTTGCCTTTCCACGTACAGAATCTAGTTCGAAGGGAAAGGTGGATGAAGTTGATGATATGGTCATGCAGAAGTTTCAACAATTCAAGCAATTTGATACTGTTGATTCTTTTCCTGATCATCACTTTGATAAGGAGGGAACTTCAGAGTCACAGAAACCTAAAAATTGGGCCAAAAAGATCCAGGAGGAATGGAAAATTTTAGAGGAAAATCTGCCTGACACAATCTTTGTGAGAGTTAGTGAATCAAAGATGGAGCTTCTAAGGGTTGTCATCATTGGACCTCAAGGCACCCCATATCATGATGGTCTTTTCTTTTTTGATTGCCTCTTTCCTTCTAACTATCCTGCAGTTCCACCGAAAGTTCACTACCACTCAGGTGGCCTAAGACTAAATCCAAATTTATATCAATGTGGAAAAGTCTGCCTTAGTCTTTTGGGAACTTGGCATGGTAAGAATAGTGAGAACTGGATTGCAGAAAAATCAACCATGCTACAAGTATTGGTTTCAATACAAGCTCTAATTCTAAACGAGAAGCCTTTCTTTAATGAGCCTGGATACATATCAACATATCCTGGTGTGGAGGGGCAAAGAAGATCTAAGGAGTACAACGAGAATACATTTATTTTATCCTTGAAGACAATGATGTATACCCTGCGTAAACCTCCAAAGCCCTTCGAGGAGTTTGTTGCTGGGCATTTCCGAAACCGAGCATATTTCCTACTGACAGCATGTAAATCATACGTTGAGGGGGCTCCGGTTGGGTCGGTTGTACATAATCTAGTTCCAAGTATTAGTTCTGCAACTGCGGCTAACGGCCAAAAGGAATTCCAGTCAGCTGTGAGTAGGATGATGAATACTCTTATTGCATTTTTCACCAAAAATGGCTCCACAGACTGTGATGAGTTTCGATCTCCTGAGATTTATAACTTGTCTCCTGCGGCTACTGCAAACTTAGAGGTTTACAAGATAGAGTCTTCTGGCACAACAACATTGACCCAGGTGTGA 1380 0.4123 MDLHENPQNSGMKKRKPEQDDALISDHGNSMSVGESSGSGDNNQNGSTSDISCPEDEDMIDDDADMIDDDDADEDADYAFGYNDDIYEDDYSSMQDQFDSVDLPPGVEASLPWLKDISSSECKQAVAFPRTESSSKGKVDEVDDMVMQKFQQFKQFDTVDSFPDHHFDKEGTSESQKPKNWAKKIQEEWKILEENLPDTIFVRVSESKMELLRVVIIGPQGTPYHDGLFFFDCLFPSNYPAVPPKVHYHSGGLRLNPNLYQCGKVCLSLLGTWHGKNSENWIAEKSTMLQVLVSIQALILNEKPFFNEPGYISTYPGVEGQRRSKEYNENTFILSLKTMMYTLRKPPKPFEEFVAGHFRNRAYFLLTACKSYVEGAPVGSVVHNLVPSISSATAANGQKEFQSAVSRMMNTLIAFFTKNGSTDCDEFRSPEIYNLSPAATANLEVYKIESSGTTTLTQV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02130 459 Pfam Ubiquitin-conjugating enzyme 185 314 IPR000608 -
Phco4g02130 459 MobiDBLite consensus disorder prediction 54 77 - -
Phco4g02130 459 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 180 340 IPR000608 -
Phco4g02130 459 SUPERFAMILY UBC-like 166 347 IPR016135 -
Phco4g02130 459 Gene3D Ubiquitin Conjugating Enzyme 139 419 IPR016135 -
Phco4g02130 459 MobiDBLite consensus disorder prediction 1 77 - -
Phco4g02130 459 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 117 423 - -
Phco4g02130 459 SMART ubc_7 183 340 - -
Phco4g02130 459 MobiDBLite consensus disorder prediction 1 23 - -
Phco4g02130 459 MobiDBLite consensus disorder prediction 25 52 - -
Phco4g02130 459 FunFam Putative ubiquitin-conjugating enzyme E2 38 143 419 - -
Phco4g02130 459 CDD UBCc 183 330 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02130 Phco-Chr4 41807414 41811254 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02130 4 41807414 41811254 Phco4g02130 4 41807414 41811254 ECH