Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02049 ATGGAGTCGGATTCAGACTCCGACGGATCTCACATCTCCGCAACTCCTCCGAGACAATTAAGTTCGTCACCGCCGCGGCCGCCACCACCACCACCTCTCGAGGTTTCAAACAAATCCCGAGTCAGAATCAAACCCTCAAAATCAAAACCATCCCCTTCTGGATCCTCCAAAGTACCGTCGAAACCCGACCGCATCCAGGAAACACCTTTATCCCTTCCCACCGATCTCCCCTTCCAAATTCGGCGACCCTCCGGCCCGGCGTCAGTTTCCTCCTCCATTGAAACCCTCCCTTCTGGTTTCTTCTCCTCCTCATACTCTGCTTCGTTCGCGAAAATTCGAAGACCGCTCGTTAACTTTGAACCTTCTGGAATCGAAACGGCTCTTACTTCCGCCGCGTCTGATTCACGCACCGAGAGCGCCGATGCGAGGAAACGCGGTAAGGCGCGGCTTCCCAACCTCATAGGTGCCAGCGCGCCTATGCCTGTCGTGAAGCCTCGACCATGCAGCGGCGGTGATGGCAACTTTGTGAAGCTCAACTTGAGTGGCAAGCGAAGGAAGTTCCTGAATAAGAAGGGAAAATTCGGCGGGAAAAGGTACAAGAGAGGGAAATTCAAATCGCAGCAGGAAAAGGAGGGGGAAGAGAAGGATATTGGAGAGTTGAAGCAGAGAGGGGGTTGTAAGATTCGTGAGATTGATTGCGCTGTGGTGGAAGAGGCTGTGGCTGCGGCGCTTGATGAGCCTTCGGAGGAGAATTTGGTGGAGATTTTGAAATTGGTTTATGGCTATGATTCTTTTCGAGACGGGCAGGTTGATGCAATTAAGATGGTTCTTGCTGGGAAGTCAGGAGTGGTTGTTTTGCCGACCGGAGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTCTGATCTTGCCTGGGATTACATTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGCTGAGGCAATTGCCTTATGTGATTAGGGGTGGTCTTCTATCCAGTACTCAGACACCTGAAGAAGCCTCTGAATCACTGATGCAGCTTCGACAAGGGGGGATAAAGGTGCTTTTTGTTTCGCCGGAGCGGTTTCTGAATGAAGATTTTGTGTCTACTATTTCTTCTTTGTCAGCCATATCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCGTCTTTTATGAGACTTAGAGCATCTCTGCTTCGTAAGACACTTAATGTTCGTGCTGTGCTTGCAATGACAGCAACTGCTACTACCACAACTTTAGATGCCATCATGTCTGCTCTAGATATCCCTTCCACAAATCTTATTCAGAAGGCGCAGTTAAGGGACAATTTTCATTTATCAGTGTCTATGGTCAGAAACAGAATGAAAGACCTTCTGATTTTGATAAAGTCTCCTCCTTTTGCTGAAGTTCAGAGCATGATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAGCAGATATTTGAATGATAACAATATCTTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGACTTGTTTAATTCCAACAAGATCAGAGTGGTTGTCGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGTGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTACTGCCACCTATTTTATGATGATGAGACATTTTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCAGTGAACAAATTTCTGCATGAAGTCTTTCCTGCTGATAAAAGCTCCTGTGGGAAAATATGTTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTTACTCTTCTGACACGCTTGGAGTTGGGTCATGTGCAGTACTTGCAGTTACTTCCACAGATAAATGCAACTTGCACTTTGGCTTTCCATAAGACTACTCCGCCATTACTTGCCCAAAAAGTATCTGCTATAGCTGTAATTCTAAAAAGATCTGAAAATAAGCATGGGCAATATATTTTTGACATCCCTACTGTGGCAAATGACATGGGGGTTACAGCAGTTGAATTAACAAATCAGTTGTACGACCTGAAGCTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCTACAGACTTGTTATCACTATCAGAAGATATTACCCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAGTGCTGTATATTTTGCATTAAATCTATGTGATACGATGCAAGGTTGCAGCGGCACCAATCACACACCATGCGTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATACTGATTTCTGCAAGAAAATTGGCCAAAGCAGTCCTTTCCTGCGAGCGGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCCCGATTTACACCAAGAGCTGTTGCGAGAGTAATGCATGGAATTGCAAGCCCAGCGTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACACGAATAGACTTTAAGATAGTGATGGAAGCAGCAAAAGAAGAACTTAAAAAAATCGTCGGAAAAGATATTCTCTAA 2709 0.443 MESDSDSDGSHISATPPRQLSSSPPRPPPPPPLEVSNKSRVRIKPSKSKPSPSGSSKVPSKPDRIQETPLSLPTDLPFQIRRPSGPASVSSSIETLPSGFFSSSYSASFAKIRRPLVNFEPSGIETALTSAASDSRTESADARKRGKARLPNLIGASAPMPVVKPRPCSGGDGNFVKLNLSGKRRKFLNKKGKFGGKRYKRGKFKSQQEKEGEEKDIGELKQRGGCKIREIDCAVVEEAVAAALDEPSEENLVEILKLVYGYDSFRDGQVDAIKMVLAGKSGVVVLPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPYVIRGGLLSSTQTPEEASESLMQLRQGGIKVLFVSPERFLNEDFVSTISSLSAISLVVIDEAHCISEWSHNFRPSFMRLRASLLRKTLNVRAVLAMTATATTTTLDAIMSALDIPSTNLIQKAQLRDNFHLSVSMVRNRMKDLLILIKSPPFAEVQSMIIYCKFQYETDQISRYLNDNNILAKSYHSGITAKERSYVQDLFNSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETFFKLRSLMYSEGVDEYAVNKFLHEVFPADKSSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGHVQYLQLLPQINATCTLAFHKTTPPLLAQKVSAIAVILKRSENKHGQYIFDIPTVANDMGVTAVELTNQLYDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSEDITQWLSEVENCKVRKMDAMFSAVYFALNLCDTMQGCSGTNHTPCVQRKILDYFSGVDNTDFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTRIDFKIVMEAAKEELKKIVGKDIL 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02049 902 Pfam DEAD/DEAH box helicase 267 429 IPR011545 GO:0003676|GO:0005524
Phco4g02049 902 MobiDBLite consensus disorder prediction 202 218 - -
Phco4g02049 902 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 621 IPR001650 -
Phco4g02049 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 593 IPR027417 -
Phco4g02049 902 Pfam Helicase conserved C-terminal domain 481 574 IPR001650 -
Phco4g02049 902 MobiDBLite consensus disorder prediction 1 93 - -
Phco4g02049 902 Gene3D - 451 634 IPR027417 -
Phco4g02049 902 MobiDBLite consensus disorder prediction 46 62 - -
Phco4g02049 902 MobiDBLite consensus disorder prediction 20 35 - -
Phco4g02049 902 SMART ultradead3 261 457 IPR014001 -
Phco4g02049 902 CDD DEXHc_RecQ4-like 253 446 - -
Phco4g02049 902 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 380 389 IPR002464 -
Phco4g02049 902 NCBIfam RecQ family ATP-dependent DNA helicase 254 609 IPR004589 GO:0004386|GO:0006310
Phco4g02049 902 PANTHER DNA HELICASE RECQ FAMILY MEMBER 241 756 - -
Phco4g02049 902 CDD SF2_C_RecQ 451 584 - -
Phco4g02049 902 SMART helicmild6 494 575 IPR001650 -
Phco4g02049 902 MobiDBLite consensus disorder prediction 195 218 - -
Phco4g02049 902 FunFam ATP-dependent DNA helicase Q-like 5 451 642 - -
Phco4g02049 902 Gene3D - 235 443 IPR027417 -
Phco4g02049 902 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 443 IPR014001 -
Phco4g02049 902 FunFam ATP-dependent DNA helicase Q4 233 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02049 Phco-Chr4 40655475 40664647 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02049 4 40655475 40664647 Phco4g02049 4 40655475 40664647 ECH