Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco4g01979 | ATGAGCGATCATCTGGTGCTGTTCGTGGACCGTCTAGTGCGGCCCGTGCCGGTGGTGGAGCCGCTGGCCCAGCACCCGGTACAGCCCTCCCCCGAGCCCTCGACCCCCGTCGATGAGGCCGCCGCGGGCCCCTCCGGCTCCGCTTCGGTGGCCGAGGACGACAGCGACGACGAGGACGCGCTGCTGCTGCCCTTGGCGGAGTGTCGCATTTGCCAAGAGGAGGATAGCGTCAACAATTTAGAAACGCCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTCCAGCATTGGTGTAATGAGAAAGGAGACATAATTTGTGAGATTTGTCACAAGTCGTATGAACCTGGTTATACTGCACCACCACCTCGTCCTCCGCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGATTTGCGTGACCCCCGACTTTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGAAGCTGAATATGATGGATATGCTGCTTCAAATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCTCTGATTTTAATGGCCCTTTTACTTTTGAGGCATGCACTTTCTGTCACGGACGCAGATGCTGAAGATGATCCTTCAACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCCTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACTCAAGTTGCTTTTGTTCTACAATCTGAACAACGTAGGGGTCTGCAGTTTGCCATAGCACAAGGACCACCAATGAACACACACCAGGAACAACTGTAG | 861 | 0.5238 | MSDHLVLFVDRLVRPVPVVEPLAQHPVQPSPEPSTPVDEAAAGPSGSASVAEDDSDDEDALLLPLAECRICQEEDSVNNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYTAPPPRPPPEETTIDIGGGWTISGMPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSVALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSEQRRGLQFAIAQGPPMNTHQEQL | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco4g01979 | 286 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 60 | 120 | IPR011016 | GO:0008270 | |
| Phco4g01979 | 286 | Pfam | Protein of unknown function (DUF3675) | 119 | 237 | IPR022143 | - | |
| Phco4g01979 | 286 | Pfam | RING-variant domain | 68 | 113 | IPR011016 | GO:0008270 | |
| Phco4g01979 | 286 | CDD | RING_CH-C4HC3_MARCH | 68 | 114 | - | - | |
| Phco4g01979 | 286 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 247 | IPR033275 | - | |
| Phco4g01979 | 286 | FunFam | RING/FYVE/PHD zinc finger protein | 56 | 124 | - | - | |
| Phco4g01979 | 286 | SMART | ringv_2 | 67 | 114 | IPR011016 | GO:0008270 | |
| Phco4g01979 | 286 | Coils | Coil | 156 | 176 | - | - | |
| Phco4g01979 | 286 | SUPERFAMILY | RING/U-box | 67 | 118 | - | - | |
| Phco4g01979 | 286 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 122 | IPR013083 | - | |
| Phco4g01979 | 286 | MobiDBLite | consensus disorder prediction | 23 | 56 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco4g01979 | Phco-Chr4 | 39373259 | 39375481 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco4g01979 | 4 | 39373259 | 39375481 | Phco4g01979 | 4 | 39373259 | 39375481 | ECH |