Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01541 ATGGCCACCAACACTCATTTCATCCTTTCACTCCCACCACGTTACGCCTTTTCTATTTCCTCTTCTTTCCCATTTCTTCCAACAAACACCGCGCTCTCTTTCTCTCTCCTTCGCCTTCGATCCCTTCCTCTTTCCCTCAATTTCCGTGCATCCTTCTCCTTCAAGTCCCCTACCTCAACCATTCGCGCATTCTCCGACGCCGAGGAGGACGAAGAAGAAGATGATGATGATGAAGAAGAAGACGAAGATGAAGACGATGACGTTGCTGCCGACGAATACGACGACGTCTCCGCTGATGCTCCCGACGACGACGCCGGTGTGTTCGCTCGCCACGACGGATTCAAGTGGCAGAGAGTCGAGAAGCTCTGCAACGAAGTCAGGGAGTTCGGCGCGGATATCATTGACGTCGACGAGCTGGCCTCCGTCTACGACTTTCGCATCGACAAGTTTCAGCGGCAGGCGATACTGGCGTTTCTGAGAGGCTCGTCGGTGGTGGTTTCCGCTCCGACGAGCAGCGGCAAGACGCTGATTGCGGAAGCCGCGGCGGTGGCCATGGTGGCTCGGGGACGGCGAATATTCTACACGACGCCGCTCAAGGCGTTGTCCAATCAAAAGTTTCGCGAATTTCGTGAGACTTTTGGTGACAGTAATGTTGGCCTTCTTACGGGTGATTCTGCCGTGAACAAGGATGCTCAGGTTTTGATTATGACCACGGAGATATTGCGCAACATGTTGTATCAGAGTGTTGGTAATGTTTCTTCTGGAAATGGACTTGTAAATGTTGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGTACAGTCTGGGAGGAGATTGTTATTTATTGCCCAAAAATAGTTCAACTAATTTGCCTGTCAGCAACTGTTGCAAATCCAGATGAGTTGGCTGGCTGGATTGGTCAGATTCATGGTGAAACTGAATTGGTAACATCGTCAAAACGCCCTGTTCCATTGACTTGGCATTTCTCTATGAAGAATTCTTTATTACCACTTCTTGACGAGAAAGGAACACATATGAACAGGAAGCTGTCATTCAATTATTTACAACTTCAAGCTGCAGGGGCTAAACCTTACAAGGATGATTGGTCTAGAAAAAGGAATTCCCGGAAACGGGGAGCACGCTTTAGCTATGATAGTGATGATAGCATGTTTGAACAACGTTCTCTTTCAAAGAATGATATAAATGCCATTCGTCGATCACAAGTTCCTCAAGTAATTGATACATTATGGCAACTTCAGTCCAGGGATATGCTGCCAGCTATTTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCAGCTGTGCAATATCTAGAAAGTTGCAAACTTTTAGATGAGTGTGAATCAAGTGAGGTTGAACTAGCCTTGAAGAAGTTCCGCAAGCTGTATCCTGATGCTGTCAGAGAATCATCTATAAGAGGACTTTTGCAAGGGGTTGCCGCACATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAGCTGTTTCAAAGAGGACTTGTTAAGGTTGTTTTTGCTACAGAAACCCTGGCTGCTGGAATCAATATGCCTGCCAGAACAGCTGTTATTTCATCCCTCAGTAAAAGGGGTGATAGTGGGCGTATACCATTAAGCTCAAACGAACTGCTTCAGATGGCTGGGCGTGCAGGACGCAGAGGCATTGATGAAAGTGGTCATGTAGTTCTCATCCAAACTACTAGTGAAGGTGCTGAGGAGGGCTGCAAAGTTCTTTTTGCTGGACTAGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCAGTGGTCAAATGAATCAGGTAACATGAAACCTTCCACGGGGAGAACTTTGGAAGAAGCTAGGAAATTAGTTGAGCAGAGTTTTGGGAATTATGTTAGTAGCAATGTAATGCTGGCTGCTAAAGAGGAACTTGATAAAATTGAGAAAGAAATTAAGTTGCTGATGTCAGAAACTACTGATGAAGCTGTAGATAGAAAAACCAGGAAGGCCTTAGCACCACGGCAATACAAGGAAATTGCAGAATTACTGGAAGATTTAAGATCAGAAAAGCGTGTTCGGTCTAAATTGCGCAAACAGGTTGAAGCAAAGAGAATGTCTGCCCTGAAACCTTTGTTGGAGGAGCCCGAAAGTGGAAATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTGAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTTGACTCTCTGGATGCTTCAAAACTCAAAACTATGATTACTTCTGTTGATTCTTTTGCATTAAATTTAGCAGAAGTAGAGCCAAGTGTTACAGATTGTGCACTGAATAAGGATCTTGAACCTTCATATCATGTGGCTCTTGGTTCAGATAACACTTGGTATCTATTTACAGAAAAGTGGGTTAAGACAGTATATGGGACAGGCTTTCCTAATGTTCCATTGGCTCAAGGGGATGCTCGACCTCGAGAAATTATGAGCACTCTCCTTGATAACGGTGATATGAATTGGGATAAGCTTTCTCACTCTGAGCATGGTGGTTTATGGTTCATGGAAGGATCTCTTGATACATGGTCTTGGAGCTTAAATGTTCCTGTTTTGAGTAGCTTGTCAGAAAATGATGAGCTACTACTAAAGTCTCAAGATTACAAAGATGCCATTGAATGTTACAAGGATCAGAGAAATAAAGTTGCACGGTTGAAGAAAAAGATATCTCGTAGTGAAGGCTATAAAGAATATTTTAAAATTCTAGACGCAGTCAAGTTTGTTGAGGAGAAAATCAAGCGCCTGAAGAATAGATCTAAACGTTTGATTAATAGGATCGAACAGATTGAACCCTCAGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATTCATGAAATCAGAGCTTTAGATATTAATACACATGTCATATTTCCACTTGGTGAAACCGCTGGTGCAATTCGAGGAGAAAATGAGCTATGGCTTGCGATGGTTCTTCGCAATAAAATTTTACTAGATCTAAAACCTCCACAACTCGCTGCAGTGTGCGCAAGTTTAGTGTCCGTGGGTATCAAAGTCCGACCCTGGAAAAATAACAGTTACATTTATGAGCCTTCCGCAACTGTAACCAAATTTATAACCTTATTAGATGAACAAAGAAATGCCTTATTGGCATTGCAGGATAAACATGGGGTGACAATCTCCTGCTGTTTGGATAGCCAGTTTTGTGGCATGGTTGAGGCCTGGGCTTCTGGGTTGACTTGGAGAGAAATAATGATGGATTGTGCAATGGATGATGGCGATTTAGCTCGTCTCCTTCGCCGGACCATTGATATCTTAGTTCAGATTCCAAAGTTGCCAGATATTGATCCATTGTTGCAGCGTAATGCAAAGGCTGCTTCTGCTGTCATGGATCGGCCTCCGATAAGTGAACTTGTGGGGTAA 3492 0.4367 MATNTHFILSLPPRYAFSISSSFPFLPTNTALSFSLLRLRSLPLSLNFRASFSFKSPTSTIRAFSDAEEDEEEDDDDEEEDEDEDDDVAADEYDDVSADAPDDDAGVFARHDGFKWQRVEKLCNEVREFGADIIDVDELASVYDFRIDKFQRQAILAFLRGSSVVVSAPTSSGKTLIAEAAAVAMVARGRRIFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSGNGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKIVQLICLSATVANPDELAGWIGQIHGETELVTSSKRPVPLTWHFSMKNSLLPLLDEKGTHMNRKLSFNYLQLQAAGAKPYKDDWSRKRNSRKRGARFSYDSDDSMFEQRSLSKNDINAIRRSQVPQVIDTLWQLQSRDMLPAIWFIFSRKGCDAAVQYLESCKLLDECESSEVELALKKFRKLYPDAVRESSIRGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGRIPLSSNELLQMAGRAGRRGIDESGHVVLIQTTSEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIQWSNESGNMKPSTGRTLEEARKLVEQSFGNYVSSNVMLAAKEELDKIEKEIKLLMSETTDEAVDRKTRKALAPRQYKEIAELLEDLRSEKRVRSKLRKQVEAKRMSALKPLLEEPESGNLPFLCLQYRDSEGVEHSIPAVFLGKVDSLDASKLKTMITSVDSFALNLAEVEPSVTDCALNKDLEPSYHVALGSDNTWYLFTEKWVKTVYGTGFPNVPLAQGDARPREIMSTLLDNGDMNWDKLSHSEHGGLWFMEGSLDTWSWSLNVPVLSSLSENDELLLKSQDYKDAIECYKDQRNKVARLKKKISRSEGYKEYFKILDAVKFVEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHVIFPLGETAGAIRGENELWLAMVLRNKILLDLKPPQLAAVCASLVSVGIKVRPWKNNSYIYEPSATVTKFITLLDEQRNALLALQDKHGVTISCCLDSQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDILVQIPKLPDIDPLLQRNAKAASAVMDRPPISELVG 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01541 1163 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 945 1155 - -
Phco4g01541 1163 Gene3D - 940 1155 - -
Phco4g01541 1163 Coils Coil 894 924 - -
Phco4g01541 1163 SMART ultradead3 143 333 IPR014001 -
Phco4g01541 1163 Gene3D - 327 595 IPR027417 -
Phco4g01541 1163 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 319 IPR014001 -
Phco4g01541 1163 Pfam DSHCT (NUC185) domain 992 1158 IPR012961 -
Phco4g01541 1163 Coils Coil 697 717 - -
Phco4g01541 1163 CDD SF2_C_Ski2 410 578 - -
Phco4g01541 1163 SMART helicmild6 464 566 IPR001650 -
Phco4g01541 1163 MobiDBLite consensus disorder prediction 61 89 - -
Phco4g01541 1163 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 612 IPR001650 -
Phco4g01541 1163 FunFam ATP-dependent RNA helicase 110 326 - -
Phco4g01541 1163 MobiDBLite consensus disorder prediction 66 89 - -
Phco4g01541 1163 SMART DSHCT_2 988 1162 IPR012961 -
Phco4g01541 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 578 IPR027417 -
Phco4g01541 1163 SMART AAA_5 160 322 IPR003593 GO:0016887
Phco4g01541 1163 Coils Coil 655 675 - -
Phco4g01541 1163 Gene3D - 108 326 IPR027417 -
Phco4g01541 1163 Pfam DEAD/DEAH box helicase 150 302 IPR011545 GO:0003676|GO:0005524
Phco4g01541 1163 Coils Coil 941 961 - -
Phco4g01541 1163 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 79 1158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01541 Phco-Chr4 14380913 14388545 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01541 4 14380913 14388545 Phco4g01541 4 14380913 14388545 ECH