Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01537 ATGAGAAACTATTTTCACTTACTTTTCTTCACCCTATCCCTTCTGTTGGGCCAATCCAGACCCGACCCTGACCCACTTCAAGATTATTGTGTTGCTGATAACAAAGGTGAATTTTTTGTTAATGGGGTGCCTTGTATCAACCCAGATAAAGTTTCGCCATCACATTTTGTGACATCTGCTTTGTCTAAGAATGGTAACACTAGTAACCAATTTGGCTTCAGTGTCACAGCCACCAACACTGTTAATCTTCCTGGGCTTAACACATTGGGCCTGGTATTGGTCCGGGTTGATATAGCGGGGAATGGGATCGTGCCACCTCACTCGCATCCACGGGCCTCCGAAGTGACCACTTGCCTCAAGGGTCAGCTTCTTGTGGGCTTTGTTGACACGAATAACCGTGTGTTTACCCAGAACCTGAAGCCCGGTGAGTCATTTGTGTTCCCAAAGGGCCTGGTACATTTCTTGTTCAATAGTAACTCAAGGGAACCAGCACTAGCTCTTTCTGGTCTAAATAGCCAGAACCCAGGTGCACAAATTGCATCACTTGCAACATTTGCTAGCAAGCCTTCTATTGATGATGAAATTCTTAAGAAGGGTTTCCAAATTACCGGCAGAGAAGTGGAAACCATTCGTAGAAACCTTGGAGGATGA 651 0.4547 MRNYFHLLFFTLSLLLGQSRPDPDPLQDYCVADNKGEFFVNGVPCINPDKVSPSHFVTSALSKNGNTSNQFGFSVTATNTVNLPGLNTLGLVLVRVDIAGNGIVPPHSHPRASEVTTCLKGQLLVGFVDTNNRVFTQNLKPGESFVFPKGLVHFLFNSNSREPALALSGLNSQNPGAQIASLATFASKPSIDDEILKKGFQITGREVETIRRNLGG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01537 216 Gene3D Jelly Rolls 21 216 IPR014710 -
Phco4g01537 216 CDD cupin_OxOx 22 214 IPR001929 GO:0030145
Phco4g01537 216 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Phco4g01537 216 FunFam germin-like protein subfamily 2 member 1 21 216 - -
Phco4g01537 216 Pfam Cupin 61 207 IPR006045 -
Phco4g01537 216 SMART Cupin_1_3 59 208 IPR006045 -
Phco4g01537 216 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Phco4g01537 216 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Phco4g01537 216 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Phco4g01537 216 SUPERFAMILY RmlC-like cupins 52 214 IPR011051 -
Phco4g01537 216 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 19 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01537 Phco-Chr4 14323206 14323856 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01537 4 14323206 14323856 Phco4g01537 4 14323206 14323856 ECH