Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01526 ATGAGATTAAGAGTACTAAGAAGCTTTCTGTTCATTTTAACACTCTCTTCTCTATTTGTCGATGTATCTGTCTCAATATCTTTTCCACCAGCCGTTGGATTGCAAATAGCAAGACAATTCCCGTTGTGGCTTAGATTCATCAGATCGAGTAAATTGTTTTCCAGCTTCTGGAACAAACTCAAGTCATTCTTCACATTCAAGGAGCTAAAACTTGGAGACATAGCTAAGGGTTTGTCTAATGTCAAAGACTATTTAGACCTCTTCGGCTACTTAAACTCCACTTCACATTCAAACTTCAGCGACTACTTCACACTCGATCTCCAATCCGCAATAATCAAGTACCAGAAAAATTTCAATCTCAACGTCACGGGGAAGCTCGACAGAAACACCTATAACGTCATATCACGGCCACGATGCGGTGTTCCCGACATAGTCAACGGCACCACCACGATGAACTTGGGCGTATCCAACACGACGTCGTTTAAACCATGGTGGAAAGAGGGGAAGAGAGAACTGACCTACGCTTTTCACCCTGAGAACAACGTCACTAACGGCGTCAGGTTTCTGTTCCAAGATGCCTTCGACCGGTGGTCGAATGTGACTTCGTTGAAGTTCACGGAGACGACGAGGTTCAATGGTTCGGATGTGAAGATAGCGTTTGTGGTGTTCGATGGAAAAGGTGGAGCGAAGGGGGTTACGGACACGGACTATAGTCAGCATGTGGGGAACGTGTATTTGGACTCGGGGGAGGAGTGGGTGGTACTTGGTGAGAACGATGATGGTGACGTGGACTTGGAATCTGTGGTGATGCACCTGGTGGGTCACGTGCTAGGGTTAGGGCATTCCTCTGTGGAGGAGGCTGAGTTTGCGTTGGATGACTTGCAGAGGATTCATCAAATATATGGTGTGAACTCTAAATAA 921 0.4615 MRLRVLRSFLFILTLSSLFVDVSVSISFPPAVGLQIARQFPLWLRFIRSSKLFSSFWNKLKSFFTFKELKLGDIAKGLSNVKDYLDLFGYLNSTSHSNFSDYFTLDLQSAIIKYQKNFNLNVTGKLDRNTYNVISRPRCGVPDIVNGTTTMNLGVSNTTSFKPWWKEGKRELTYAFHPENNVTNGVRFLFQDAFDRWSNVTSLKFTETTRFNGSDVKIAFVVFDGKGGAKGVTDTDYSQHVGNVYLDSGEEWVVLGENDDGDVDLESVVMHLVGHVLGLGHSSVEEAEFALDDLQRIHQIYGVNSK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01526 306 Pfam Matrixin 168 287 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Phco4g01526 306 ProSitePatterns Matrixins cysteine switch. 137 144 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Phco4g01526 306 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 130 301 - -
Phco4g01526 306 Gene3D Collagenase (Catalytic Domain) 72 306 IPR024079 GO:0008237
Phco4g01526 306 PRINTS Matrixin signature 190 205 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco4g01526 306 PRINTS Matrixin signature 268 293 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco4g01526 306 PRINTS Matrixin signature 134 147 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco4g01526 306 SUPERFAMILY PGBD-like 81 144 IPR036365 -
Phco4g01526 306 SMART col_5 161 303 IPR006026 GO:0006508|GO:0008237|GO:0008270
Phco4g01526 306 Pfam Putative peptidoglycan binding domain 79 133 IPR002477 -
Phco4g01526 306 PANTHER MATRIX METALLOPROTEINASE 63 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01526 Phco-Chr4 14209980 14210900 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01526 4 14209980 14210900 Phco4g01526 4 14209980 14210900 ECH