Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01522 ATGGGATTTCTTCAACATCCCTTGTGTCGCCACTCAAAACAACAACAACAAAAATACTATGATCACTACCATTCAGAATCATCGACCTCTTCTTCTCTACATTCACAACCAAGTCTTCCTTCAGTCCCTTCACTAAGTTCCCTCACCCCACAACAACCGCACCACCCCCAACAACAACCTCAAACCACCGTCGAAATCCACTCCTCCCCAATCTCCTCCCTCGCCCTTCACGGAAAACTCCTCTACAGCGCCGCCTCCAGCGGGGAGGTCAAAACATGCAGCAGAGATTCTTTCATACTCCAAACCAACAGCACAACCAACACCAACGTTGTGGTCGTCGAAACCACCAACGCGCCCATCAAGTCCCTCATCGTATTCCACGACACGCTCTTCACCGCACATCAAGACCACAAAATCCGAGTCTGGAAAACCGACCAACCCACCAAGTGCATCGCCACGCTTCCCACGCTCCACGATCGTTTTTTCAAGCTATTCTCCTCCAAGAACTACGTCGAGGTGCGCCGCCACAAGAAGCGCACGTGGGTGCATCACGTGGACGCAGTTTCCACCCTCGCGCTCTCTCACGACGGCTCCCTCCTCTACTCCGCTTCCTGGGACAGGACGTTCAAAATCTGGCGAACCTCGGACTTCAAATGTTTGGAGTCCATACAAAACGCGCACGAGGACGCGATTAACTCCTTGGTTTTGTCGAATGACGGTGCTGTCTACACTGGTTCGGCCGACACAAAGATAAAGATGTGGAAGAAGCGTGAGGGTGAGAAAAAGCATTCCCTTGTGGCAACGTTAGAGAAGCATAAATCCGCAGTTAACGCTCTCGCGCTTAGCGCAGATGGGTCGGTGCTGTACTCTGGCGCGTGTGACAGATCAATTTTAGTGTGGGAAAGTGATGAGAATGATGATAATAATATGGTGGTGGTGGGGGCTTTAAGGGGGCATACAAAGGCGATACTGTGTTTGGTGGTGATGGCGGATTTGGTGTGTAGTGGATCTGCTGATAACAGTATTAGGGTATGGAGGAAAGAGATTGAGAAGGGTTATTCGTGTTTGGCGGTGTTGGAAGGTCATCGACGACCAGTGAAGTGTTTGGCTATGGCTGTTGACTCCAACAGTGGTGGTCCCGAAGAGGATGATAGGTCTTATCTGGTTTACAGTGCAGGTTTGGACTGTAACATTAAAGTGTGGCAAATACGCGTTCCTTCGGTCTCATTGTGA 1233 0.5045 MGFLQHPLCRHSKQQQQKYYDHYHSESSTSSSLHSQPSLPSVPSLSSLTPQQPHHPQQQPQTTVEIHSSPISSLALHGKLLYSAASSGEVKTCSRDSFILQTNSTTNTNVVVVETTNAPIKSLIVFHDTLFTAHQDHKIRVWKTDQPTKCIATLPTLHDRFFKLFSSKNYVEVRRHKKRTWVHHVDAVSTLALSHDGSLLYSASWDRTFKIWRTSDFKCLESIQNAHEDAINSLVLSNDGAVYTGSADTKIKMWKKREGEKKHSLVATLEKHKSAVNALALSADGSVLYSGACDRSILVWESDENDDNNMVVVGALRGHTKAILCLVVMADLVCSGSADNSIRVWRKEIEKGYSCLAVLEGHRRPVKCLAMAVDSNSGGPEEDDRSYLVYSAGLDCNIKVWQIRVPSVSL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01522 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Phco4g01522 410 SMART WD40_4 309 346 IPR001680 GO:0005515
Phco4g01522 410 SMART WD40_4 262 301 IPR001680 GO:0005515
Phco4g01522 410 SMART WD40_4 174 213 IPR001680 GO:0005515
Phco4g01522 410 SMART WD40_4 106 143 IPR001680 GO:0005515
Phco4g01522 410 SMART WD40_4 216 255 IPR001680 GO:0005515
Phco4g01522 410 SMART WD40_4 352 402 IPR001680 GO:0005515
Phco4g01522 410 SMART WD40_4 57 94 IPR001680 GO:0005515
Phco4g01522 410 FunFam BnaA09g28200D protein 171 259 - -
Phco4g01522 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 264 IPR001680 GO:0005515
Phco4g01522 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 345 IPR001680 GO:0005515
Phco4g01522 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Phco4g01522 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 345 - -
Phco4g01522 410 MobiDBLite consensus disorder prediction 21 68 - -
Phco4g01522 410 SUPERFAMILY WD40 repeat-like 56 403 IPR036322 GO:0005515
Phco4g01522 410 MobiDBLite consensus disorder prediction 1 68 - -
Phco4g01522 410 Pfam WD domain, G-beta repeat 179 212 IPR001680 GO:0005515
Phco4g01522 410 Pfam WD domain, G-beta repeat 314 345 IPR001680 GO:0005515
Phco4g01522 410 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Phco4g01522 410 Pfam WD domain, G-beta repeat 354 401 IPR001680 GO:0005515
Phco4g01522 410 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Phco4g01522 410 CDD WD40 64 402 - -
Phco4g01522 410 Gene3D - 9 161 IPR015943 GO:0005515
Phco4g01522 410 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 22 404 IPR045182 -
Phco4g01522 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Phco4g01522 410 Gene3D - 162 407 IPR015943 GO:0005515
Phco4g01522 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01522 Phco-Chr4 14131701 14132933 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01522 4 14131701 14132933 Phco4g01522 4 14131701 14132933 ECH