Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01465 ATGAACCCGTTCTCTTCAGGAACGCGTTTGAGGGACATGATCCGGGCCATCCGGGCTTGCAAGACTGCAGCAGAAGAACGGGCTGTTGTAAGAAAAGAGTGTGCTGCCATTCGTGCAGCAATAAATGAAAATGATAATGACTATCGCCATCGAAATCTGGCTAAGCTAATGTTCATCCACATGCTTGGTTACCCCACACATTTTGGTCAAATGGAATGCCTCAAGTTGATAGCATCTCCTGGATTTCCTGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTAATGTTGGTCACCAATTCTTTGAAACAAGATCTTAATCACACAAATCAGTATATAGTCGGACTTGCTCTTTGTGCTTTGGGAAACATTTGTTCAGCGGAAATGGCACGTGATCTTGCACCAGAGGTTGAGAGATTGTTGCAATTTCGAGATCCAAATATTAGGAAGAAGGCAGCATTATGCTCTATAAGGATCATAAAGAAAGTTCCTGATTTGGCAGAAAATTTTATCAATCCTGCTACTTCCTTACTTAGGGAGAAGCATCATGGGGTTTTGATCACTGGGGTTCAGCTTTGTACAGATCTGTGTAAAATTAGCACTGAAGCTCTTGAACATATTAGAAAGAAATGCACAGATGGTTTAGTCAGAACTCTTAAGGATCTAGCGAATAGTCCATATTCACCAGAGTATGATATTGCTGGTATCACAGACCCATTTCTCCACATCAGATTGCTTAAACTTTTGCGAGTGCTGGGTGAAGGTGATGCTGATGCTAGTGACAGCATGAATGACATACTTGCCCAGGTGGCTACGAAGACCGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAATGTGTTCAAACAATAATGAGCATTGAAGATAATGGTGGCTTACGTGTACTAGCCATTAATATCCTGGGAAGATTCTTGTCAAACCGTGACAACAATATCAGATATGTGGCATTAAACATGCTAATGAGGGCTGTAACAGCTGATGCACAGGCAGTACAGAGGCACCGTGCAACAATTTTAGAGTGTGTGAAGGATTCAGATGCTTCAATTCGGAAAAGAGCGCTTGAGCTTGTTTATGTTTTGGTCAATGATACTAATGTGAAGCCCTTGGCAAAAGAGCTTATAGATTATCTGGAAGTCAGTGATCAGGATTTCAGAGCTGACCTTACTGCCAAAATTTGCTCCATTGTAGCAAAGTTTTCCCCAGAGAAGATCTGGTACATTGATCAGATGCTCAAGGTTCTGTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTCATAACCAATGCTTCTGAGCTTCATGGATATACAGTAAGAGCATTGTATCGAGCATTTCAAACGTCAGCTGAACAGGAGACTCTAGTTCGAATTACAGTGTGGTGCGTTGGGGAGTATGGTGACATGTTAGTCCATAATGTTGGAATGCTTGACATAGAAGACCCAATAACAGTGACTGAGTCTGATGCAGTTGACATTGTAGAGATTGCCATAAACCGTCATGCATCAGATCTTACCACAAAAGCGATGGCTTTGGCTGCATTACTAAAACTCTCTTCACGCTTCCCTTCATGTTCAGAGAGGATTAGAGAAATTATTGTTGAGTTCAAAGGAAGCTTTGTGCTAGAATTGCAGCAGAGAGCTATTGAATTCAATGCGATCATTGCAAAGCATCAAAATATTAGGTCTACTCTTGTAGAAAGGATGCCAGTTTTGGATGAAGCAACATTCATTGGTAGGAGGGCTGGGTCTTTGCCAGGCGCAGCTTCAACTCCAACTGTACCTTCAGTTAGTCTACCAAATGGTGTTGCCAAACCTGTTGCTCCTCTTGTAGATCTACTTGATCTAGGTTCAGATGATGCTCCTGCACCTAGCTCTTCTGGTGGAGATTTTCTGCAGGACCTTTTGGGTGTTGATCTTTCTCCAGCATCACAACAATCTGGAGCTGGCCAAGCTTCAAAAAGTGGCAATGATGTTCTTTTGGATCTTTTGTCTATTGGATCACCTTCTGCCCAAACCAGCTCCTCTACAGTAGACATCTTATCCTCCAATTCTAGTAACAAAGCACAAGTTTCACCATTGGATGATCTCTCATCTGTTTCACTTTCTTCAAAGTCAACTTCGAATGCTGCTCCTATGATGGATTTATTGGATGGTTTTGCCCCCAGCCCACCAAGAGAAAACAATGGACCAGTTTATCCATCTATAACTGCATTTGAGAGCAACTCCTTGCGATTGACATTCGATTTCTCAAAACAACCAGAAAACCCACAAACAACAGTCATCCAGGCTACATTTACGAATTTGACCTCTAATACATATACAGATTTTGTTTTTCAGGCAGCTGTTCCCAAGTTTCTTCAATTGCACTTAGATCCAGCTAGCAGTAACACTCTTCCCGCAGATGGAAATGGGTCCATAACCCAAAGTTTGAAAATCACTAACAGCCAACATGGGAAGAAATCACTTGTCATGCGCACAAGGATAGCGTACAAGATAAATGGCAAGGATACACTAGAGGAAGGACAAGTCAATAATTTTCCTCGTGATTTATGA 2619 0.4162 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRAAINENDNDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPATSLLREKHHGVLITGVQLCTDLCKISTEALEHIRKKCTDGLVRTLKDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGDADASDSMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMRAVTADAQAVQRHRATILECVKDSDASIRKRALELVYVLVNDTNVKPLAKELIDYLEVSDQDFRADLTAKICSIVAKFSPEKIWYIDQMLKVLSEAGNFVKDEVWYALIVVITNASELHGYTVRALYRAFQTSAEQETLVRITVWCVGEYGDMLVHNVGMLDIEDPITVTESDAVDIVEIAINRHASDLTTKAMALAALLKLSSRFPSCSERIREIIVEFKGSFVLELQQRAIEFNAIIAKHQNIRSTLVERMPVLDEATFIGRRAGSLPGAASTPTVPSVSLPNGVAKPVAPLVDLLDLGSDDAPAPSSSGGDFLQDLLGVDLSPASQQSGAGQASKSGNDVLLDLLSIGSPSAQTSSSTVDILSSNSSNKAQVSPLDDLSSVSLSSKSTSNAAPMMDLLDGFAPSPPRENNGPVYPSITAFESNSLRLTFDFSKQPENPQTTVIQATFTNLTSNTYTDFVFQAAVPKFLQLHLDPASSNTLPADGNGSITQSLKITNSQHGKKSLVMRTRIAYKINGKDTLEEGQVNNFPRDL 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01465 872 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 752 869 IPR008153 -
Phco4g01465 872 Gene3D - 736 871 - -
Phco4g01465 872 FunFam AP-1 complex subunit gamma 742 872 - -
Phco4g01465 872 Gene3D - 2 594 IPR011989 -
Phco4g01465 872 PIRSF AP1_gamma 6 872 IPR017107 GO:0005794|GO:0016192|GO:0030121
Phco4g01465 872 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 11 860 - -
Phco4g01465 872 MobiDBLite consensus disorder prediction 691 727 - -
Phco4g01465 872 Pfam Adaptin C-terminal domain 755 869 IPR008152 GO:0006886|GO:0016192
Phco4g01465 872 SUPERFAMILY ARM repeat 25 593 IPR016024 -
Phco4g01465 872 FunFam AP-1 complex subunit gamma 2 594 - -
Phco4g01465 872 SMART alpha_adaptinc2 749 869 IPR008152 GO:0006886|GO:0016192
Phco4g01465 872 SUPERFAMILY Clathrin adaptor appendage domain 728 871 IPR013041 -
Phco4g01465 872 Pfam Adaptin N terminal region 27 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01465 Phco-Chr4 13137933 13156130 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01465 4 13137933 13156130 Phco4g01465 4 13137933 13156130 ECH