Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01456 ATGAAATCAAATCACAGCTATCATATGATCCAAACACAAAAGTCCAACACAAACCTTTCCATGATCCGAAACACAAGCGGGTCGGATCGCCGGATACTAACATTCCCGGCGGTTCTTCCATGCGAAAGCATCGGCCCCTCTATCCTTCTCCCTTCACTCATCACTCTCTGCAACGCCATTTCCTCTTTCCAACACAGGTTCTCGTGTTTCCCTTGCAACAAGCGAAACGCGAGAAACGCGATTCGTTTGACCGTGCTTCTTCAACCTTTCCTTCATGAAATCCGAGACTGCCTTTCGGGTCTTCCTGATCCGGCAACCCTGAGCCTCTCCGAGCTCCATTTAACCTTTCAGAAGCTTCTTTTCCTTCTTGAAGATCTCTCCCGTGAAGGTGCCAAGCTTTACATGTTGATGGAATCGGATCGGGTTGCCACTCAATTTCGGGTCATATCCAGATCCGTGGCCACTGCTTTAGACGTTTTCCCTTTCGGTTCTGTGGAGATCTCAAAGGAAACCAAAGAGCATGTTTTTCTGCTGAATGAACAAGCAAGGAAGGCCATATTTGAATTTGAAGAAGAAGATAAACGGGTTGTGATGAGTGTCGTGTCCGGTTTGACCCGGTTTGAGAATCAGGTTGCTCCGGATGAGGGTGATCTGAAGTGGGTCATTGAGTATATTGGGGTTAAAGGGTGGAGTGAGTGTAACAAGGAGGTGAAGTTTTTGGAGGGAGAAATTGGGTTTAAGGGCTTCGATGAGAAGAGGAATAAGGTGATACTTTTGAGTAGTTTGGTGGGGTTCATGAGTTATTGTAGATGCCTTGTGATGGAGGTTGTTGACTGTGAAGAGAGTGACAAAAAATTTGATGGAAGAGAAAGTAATGTTCAAAGTGAGATGGATCTGAGTTTGAGTTGTCTTAACCCCGATGATTTTCGATGTCCAATCACTTTGGAATTGATGAGTGATCCAGTGACAATAGAGACAGGTCATACGTATGATCGTTCTTCAATTCTGAAGTGGTTCAGAAGTGGGAATTTGACGTGTCCCAACACCGCTAAAAAGCTTATCACCACTGAAATGGTTCCAAACTTGGTGCTTCGGAAGTTGATTCAGCGGTATTGCTTTGCGAATGACATAAGTATTCCCTTTGTTGACTTGGGTCGTAGGAATCGTGAGATTACTAGGAGAGTGGAGCCTGGGAGTGTAGCAGCAGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAAAGGCAGGATTGAGAATGGAAGTGGGGAAGAGATGAATAGAGGTGCATTTGAGATAAGGCTTCTTTCCAAGACAAGCATTTTTAATAGATCTTGTTTGGTGGAAGCTGGTTTGGTGCCTCTTTCGTTGAAGTTGTTGTCATCGAGGGATTCGTTGACTCAAGAGAATGCTGCCGCAGCCCTTCTAAACCTCTCAAAATGTGCAAAGAGTAGAAGTGGGATGGCTGAGAAATGGGGTTTGGAATTAATTGTTGGGGTTTTAAAGAAGGGAGTGAAGATTGAAGCTCGCCAGCATGTTGCTGCTGTGTTGTTTTACCTTAGTGCTGAGTATGGGAACTTGTTAGGGAAAGAGCCAGAAGCAATTCCATCATTGATAAGGCTTGTCAAAGACGGTCCTTATCGGAGCAAGAAAAATGGGTTGGTTGCAATTTTTGGCCTTCTTAAGCACCCTGAAAATCATAGGAGGGTGGTCGAAGGTGGAGCAGTTCCTTTGCTAGTTGGCATCTTGAAAGGATCAGAAAATGAAGACCTTATCACAGATTCACTGGCAGTTCTAGCAACTCTGGCAGAGAAGAGAGAGGGAATGTTTGCAATTCTTCACGAAGAGGCTTTGCAAGTAGCTGTTGAAATTTTGAGTTGTTCCACTTCGAGGGTGGGAAGGGAGCACTGTGTGGCCCTATTGCTTTCTTTGTCTCTAAAGGGTGGAGAGGATGTGGTTGCTTATTTAGTGAAGAGTCCTTCTCTTATGGAATCCTTGTATTCCCAACTAAGCGCAGGCACATCTAGAGCAAGCAAGAAAGCCAGTGCTCTCATTAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGATTTAAGATTTCAGTTATTCCACAAGAACAGTTCATTCATGTTAGGTAA 2139 0.4465 MKSNHSYHMIQTQKSNTNLSMIRNTSGSDRRILTFPAVLPCESIGPSILLPSLITLCNAISSFQHRFSCFPCNKRNARNAIRLTVLLQPFLHEIRDCLSGLPDPATLSLSELHLTFQKLLFLLEDLSREGAKLYMLMESDRVATQFRVISRSVATALDVFPFGSVEISKETKEHVFLLNEQARKAIFEFEEEDKRVVMSVVSGLTRFENQVAPDEGDLKWVIEYIGVKGWSECNKEVKFLEGEIGFKGFDEKRNKVILLSSLVGFMSYCRCLVMEVVDCEESDKKFDGRESNVQSEMDLSLSCLNPDDFRCPITLELMSDPVTIETGHTYDRSSILKWFRSGNLTCPNTAKKLITTEMVPNLVLRKLIQRYCFANDISIPFVDLGRRNREITRRVEPGSVAAEGAMRMLASFLKGRIENGSGEEMNRGAFEIRLLSKTSIFNRSCLVEAGLVPLSLKLLSSRDSLTQENAAAALLNLSKCAKSRSGMAEKWGLELIVGVLKKGVKIEARQHVAAVLFYLSAEYGNLLGKEPEAIPSLIRLVKDGPYRSKKNGLVAIFGLLKHPENHRRVVEGGAVPLLVGILKGSENEDLITDSLAVLATLAEKREGMFAILHEEALQVAVEILSCSTSRVGREHCVALLLSLSLKGGEDVVAYLVKSPSLMESLYSQLSAGTSRASKKASALIRVLHDFYERRSSGFKISVIPQEQFIHVR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01456 712 Pfam U-box domain 306 374 IPR003613 GO:0004842|GO:0016567
Phco4g01456 712 Gene3D - 385 694 IPR011989 -
Phco4g01456 712 FunFam RING-type E3 ubiquitin transferase 387 698 - -
Phco4g01456 712 SMART Ubox_2 308 371 IPR003613 GO:0004842|GO:0016567
Phco4g01456 712 CDD RING-Ubox_PUB 306 358 IPR045210 -
Phco4g01456 712 Pfam Armadillo/beta-catenin-like repeat 442 478 IPR000225 GO:0005515
Phco4g01456 712 ProSiteProfiles U-box domain profile. 304 378 IPR003613 GO:0004842|GO:0016567
Phco4g01456 712 PANTHER U BOX DOMAIN-CONTAINING 83 687 - -
Phco4g01456 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 379 IPR013083 -
Phco4g01456 712 SUPERFAMILY RING/U-box 306 377 - -
Phco4g01456 712 SUPERFAMILY ARM repeat 403 687 IPR016024 -
Phco4g01456 712 SMART arm_5 480 521 IPR000225 GO:0005515
Phco4g01456 712 SMART arm_5 562 603 IPR000225 GO:0005515
Phco4g01456 712 SMART arm_5 438 479 IPR000225 GO:0005515
Phco4g01456 712 FunFam RING-type E3 ubiquitin transferase 305 377 - -
Phco4g01456 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 573 616 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01456 Phco-Chr4 12850494 12852632 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01456 4 12850494 12852632 Phco4g01456 4 12850494 12852632 ECH