Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco4g01455 | ATGCCTCGTTACCCCCCTCCTTATGGAACTATGGTTCGTCCTGTCTTTCCTCCACGCCCTCCTGGAGCAGTTAACATACCTCCAATATCACGCCCACCAGTAGCAGGGATCCCTACTGTTCGCCCAATTATTCCTCCTGTTGTCAGACCTATGGTAGCCCCTAGTGTTACCCCAGCTGAGAAGCCTCAAAACACAGTTTACATTGGCAAGATTGCATCAACTGTGGAAAATGAGTTCATGCTCTCTCTTCTTCAATTATGTGGAACTATCAAGACCTGGAAACGTCCTCAGGATTTATCAACTGGAACTCCTACCAGTTTTGGGTTTTATGAGTTTGAGTCTGCAGAAGGGGTTCTCCGTGCCTTGCGACTACTTACTAAATTGAATATTGACGGGCAAGAACTGAAGGTCAACGTGAATCAAGCTATGAAAGAACATCTGGAGCGGTATGTTCAGAAAAAAACTGGGAACTTGAACAAAGAAACTCAGGCAGGTGTAGTTGAAAAGGATGAAGGCGAACAAACTTCTAACTCAAATGAGGGTACAAAGGCTGAGAAAGAACCCTCAAATAAAGTGGACAGTGAATCAGTAAATAAAGATTCCCATGATGTGACAAACTTCGGGATTGTCACTGATGAAGATAGAGAAGGGGATCGGGAGGCTTTAGAAAAGATCACAAAGATGATAGAGGAAAGGTTGAAGACAAGACCTTTGCCTCCTCCACCTGCACAGCCAAGTGGTGATGGTTCTGTGAGTTTAACCTCAGAACAACCTGTTAAAACAAGAGAGGGAGATTCTGTGGTTGATACAGATAAGAATGAATCTGCTGAAAATAAAAGTGAGAAAGAGACAAATAATGATAAACCAAGCAGTGAACATGATAGGTCTGAAAGCCCTGATAGAAGGCATGATAGAAGAAGCAGAGAGAGGGACCGGGATAGGGAACTTAAGCGAGAAAAGGAAAGAGAACTTGAAAGGTATGAGAGAGAAGCAGAGCGGGAACGTGTTCGGAAAGAGAGAGAACAAAGACGAAGAATTGAGGAGGCTGAACGTCAATATGAAGCATATTTGAAGGAATGGGAGTATAGAGAACGAGAGAAAGAGAAAGAGCGCCAATATGAAAAAGAGAAGGAGAAGGAAAGGGAACGTAAAAGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAAGATTCTAGGAAGAGGTGGCGCAGAAGTGTGATAGAGGAGAAGAGAAAGAAGAGGTTGCGGGAGAAGGAAGATGACCTGAATGACAAACAAAAGGAAGAGGACGAAATTGCTGAGGCGAAGAAGAAGTCTGAGGAGGAACAAAAGCGTCAGAGAGATGCTTTAAAACTATTAACTGAGAATGTAGTAAATGGTGGTAATGAAAATATGATTATTGAAGAGGTCACTAATGAAGTCAAAAGCAATGTTACTGAACAAGATACTGTAGCTGATTATAGTCGTGAAGATCATACTGGTGATGGGAATGCACTAAATGTCACCAGTGATGAATTGACAATAGTGGCTCCACCTGATACACAAGGTAATGCTCCTACAAAAAAATTGGGATTTGGCCTAGTTGGTTCAGGGAAAAGAACAACTGTCCCTTCTGTTTTCCATGAAGAGGAGGATGATGATGCACACAAGGACAAAAAAATGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTGCCTGGGCCAACACCACCAAATTTGGCTGCTGCTGCAGAATTTGCGAAGCGTATATCAAGTACAAATTTCAAGGAAGATAAGCTGGATGGAGAACGGGATAGAAGTAGGCGTTCAAATGATAAGTCTAACCACTGGGATAGGGACAGAAATGATGAAGATGGTACTCACAACAGAGATGAAAACAAGGACAGAATTCCTGAACGGGACAGGGATCGAGACCATGGATCGGATAAACTTAAGACTTCTGATAACAAGAGGCTTTTGGATGCTAAACAATTGATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTATATGATAAGCATCAACTACATGATAGAATGAGACCGTGGATTTCAAAGAAAATCAAGGAGTTTTTGGGGGAAGAAGAGACTACATTGATAGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCAGCCCAAATGCTTGAGCGTCTTCAGATTATTTTGGATGAAGAGGCTGAAATGTTTGTTCTGAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGTTTGGGTCTGAGGTCAAAATCATGA | 2328 | 0.4201 | MPRYPPPYGTMVRPVFPPRPPGAVNIPPISRPPVAGIPTVRPIIPPVVRPMVAPSVTPAEKPQNTVYIGKIASTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQAMKEHLERYVQKKTGNLNKETQAGVVEKDEGEQTSNSNEGTKAEKEPSNKVDSESVNKDSHDVTNFGIVTDEDREGDREALEKITKMIEERLKTRPLPPPPAQPSGDGSVSLTSEQPVKTREGDSVVDTDKNESAENKSEKETNNDKPSSEHDRSESPDRRHDRRSRERDRDRELKREKERELERYEREAERERVRKEREQRRRIEEAERQYEAYLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVIEEKRKKRLREKEDDLNDKQKEEDEIAEAKKKSEEEQKRQRDALKLLTENVVNGGNENMIIEEVTNEVKSNVTEQDTVADYSREDHTGDGNALNVTSDELTIVAPPDTQGNAPTKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTVPGPTPPNLAAAAEFAKRISSTNFKEDKLDGERDRSRRSNDKSNHWDRDRNDEDGTHNRDENKDRIPERDRDRDHGSDKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHDRMRPWISKKIKEFLGEEETTLIDYIVSSTQEHVKAAQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLGLRSKS | 775 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco4g01455 | 775 | SMART | rrm1_1 | 65 | 138 | IPR000504 | GO:0003723 | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 184 | 234 | - | - | |
| Phco4g01455 | 775 | CDD | RRM_RBM25 | 64 | 147 | IPR034268 | - | |
| Phco4g01455 | 775 | Gene3D | - | 57 | 150 | IPR012677 | - | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 364 | 402 | - | - | |
| Phco4g01455 | 775 | Pfam | PWI domain | 698 | 761 | IPR002483 | GO:0006397 | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 153 | 348 | - | - | |
| Phco4g01455 | 775 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 66 | 136 | IPR000504 | GO:0003723 | |
| Phco4g01455 | 775 | SUPERFAMILY | PWI domain | 696 | 762 | IPR036483 | GO:0006397 | |
| Phco4g01455 | 775 | SUPERFAMILY | RNA-binding domain, RBD | 51 | 140 | IPR035979 | GO:0003676 | |
| Phco4g01455 | 775 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 64 | 142 | IPR000504 | GO:0003723 | |
| Phco4g01455 | 775 | SMART | pwi_2 | 691 | 764 | IPR002483 | GO:0006397 | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 511 | 584 | - | - | |
| Phco4g01455 | 775 | Coils | Coil | 310 | 359 | - | - | |
| Phco4g01455 | 775 | PANTHER | SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN | 1 | 775 | - | - | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 598 | 658 | - | - | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 262 | 348 | - | - | |
| Phco4g01455 | 775 | FunFam | RNA Binding Motif protein homolog | 654 | 770 | - | - | |
| Phco4g01455 | 775 | Coils | Coil | 410 | 458 | - | - | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 539 | 561 | - | - | |
| Phco4g01455 | 775 | Coils | Coil | 362 | 390 | - | - | |
| Phco4g01455 | 775 | Gene3D | PWI domain | 654 | 770 | - | - | |
| Phco4g01455 | 775 | ProSiteProfiles | PWI domain profile. | 678 | 775 | IPR002483 | GO:0006397 | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 415 | 449 | - | - | |
| Phco4g01455 | 775 | MobiDBLite | consensus disorder prediction | 247 | 261 | - | - |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco4g01455 | 4 | 12843962 | 12848936 | Phco4g01455 | 4 | 12843962 | 12848936 | ECH |