Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01410 ATGAAGAGGAACAGAAGTTTTTCCTTACTCTTTTTCCTCTCCTTGTTGGTGATTATCTTTGTCACCTTCTCTACCGTTTCTGTGGAAGCAAGGAAGAAAAATCTTCACAAACGTAACAATCATAAAGATAGTCACAGTGGCCACGGTCGAGGGTCACATTCTCCACGTCCAACACCAACCCCTCCTCCTTATTATGGTCCTCAAGGGAGCATGTTTGACGTTTTGTCTTTTGGTGCCAAGGGCAATGGAGTTTCTGATGATTCAGAGGCATTTGTAGCTGCATGGAAAGGTGCATGTAAAGTTTCTGGTGCTACAGTAAAAATTCCAGCACAACACAAGTTCCTCATCAAACCAGTTACTTTACAAGGCCCTTGTATGCCTGACCTTACTCTTCAGATAGATGGAACTCTATTGGCACCTCCTCAAGCATCTTCTTGGCCAACATCCAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTGCAGAACTTCACCATCAAAGGTTCTGGCACTGTTGATGGCCAAGGTTATTACTGGTGGAAATCCTCAGAATTTTATGACATACAGAAGAAGAGCTATTCCAAAAATATTCCAAGCATGAAACCAACAGCTATAAGATTTTACTCCAGCAACTCTGTCACAGTTCGTGATATCAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGGATTGAAGTTGACAACATTACAATATCCTCCCCAGAGAGTAGCCCAAACACTGATGGCATTCACTTACAGAACACACAGGACGTGGAAATTAAACGTTCTATCATTGCAACAGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATATTCATGTCCACCACATTAATTGTGGCCCTGGACATGGTATAAGTTTGGGAGGATTAGGGAAGGACAAGAGTGCAGCATGTGTGTCTGACATCATTGTTGAGGATATTTCTATGAAAAACACTCTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCTTTGGTATGGTTAAAAACGTGTCATTTTCCAGAATTCAAGTCTACGATGTTATGTTTCCAATAATGATAGACCAATACTATTGTGACAAGCAAAAGTGCAAGAACCACACAAGCAATGTGGTGATTTCTGGGGTTAAGTTTGATGAAATAAGTGGAACTTTTGGGATACAACCTGTCCATCTAGCTTGCAGCACTTCCATACCATGCACAGATGTTGATTTAACTGACATTCAACTGAGTCCCTCCCCTGAGTATAAAGGTTTGCAACAAGCTGTGTGCTGGAACACTTATGGAAAATCACGAGGCCCCTTGCTACCTTCAAGCATTGATGATTGCTTGAAAAGTGGTGGTGGATTAATCAAGAGGATAGCAAGGTCACATGATAGAGTATGCTACTAA 1410 0.4163 MKRNRSFSLLFFLSLLVIIFVTFSTVSVEARKKNLHKRNNHKDSHSGHGRGSHSPRPTPTPPPYYGPQGSMFDVLSFGAKGNGVSDDSEAFVAAWKGACKVSGATVKIPAQHKFLIKPVTLQGPCMPDLTLQIDGTLLAPPQASSWPTSSLFQWINFKWVQNFTIKGSGTVDGQGYYWWKSSEFYDIQKKSYSKNIPSMKPTAIRFYSSNSVTVRDIRIINSPLCHLKFDNSKGIEVDNITISSPESSPNTDGIHLQNTQDVEIKRSIIATGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDKSAACVSDIIVEDISMKNTLYGARIKTWQGGFGMVKNVSFSRIQVYDVMFPIMIDQYYCDKQKCKNHTSNVVISGVKFDEISGTFGIQPVHLACSTSIPCTDVDLTDIQLSPSPEYKGLQQAVCWNTYGKSRGPLLPSSIDDCLKSGGGLIKRIARSHDRVCY 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01410 469 PANTHER - 71 436 - -
Phco4g01410 469 MobiDBLite consensus disorder prediction 33 65 - -
Phco4g01410 469 FunFam polygalacturonase At1g48100 60 452 - -
Phco4g01410 469 SUPERFAMILY Pectin lyase-like 62 445 IPR011050 -
Phco4g01410 469 SMART pbh1 374 397 IPR006626 -
Phco4g01410 469 SMART pbh1 232 258 IPR006626 -
Phco4g01410 469 SMART pbh1 341 362 IPR006626 -
Phco4g01410 469 SMART pbh1 259 280 IPR006626 -
Phco4g01410 469 SMART pbh1 312 333 IPR006626 -
Phco4g01410 469 SMART pbh1 282 302 IPR006626 -
Phco4g01410 469 Gene3D - 65 449 IPR012334 -
Phco4g01410 469 Pfam Glycosyl hydrolases family 28 104 422 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01410 Phco-Chr4 12265880 12268453 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01410 4 12265880 12268453 Phco4g01410 4 12265880 12268453 ECH