Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01307 ATGACCGCCTCTCAACTCATCTCCGTTAGTCCCGACGAACTCCGCTTCCATTTTGAGTTGGAGAAGCAAACGTTTTGCGATCTTAAGGTCCTCAATAACACACAGAATCATGTTGCTTTCAAGGTCAAAACCACTTCTCCCAAGAAATACTTCGTACGACCAAACACCGGTGTCGTACACCCCTGGGACTCCTGTATCATCAGAGTCACCCTCCAAGCCCAACGGGAATACCCTCCAGACATGCAATGTAAAGACAAGTTTCTCTTACAGAGTACAATAGTGAATCCAAATACTGATGTTGACGACCTCCCACCAGATACTTTTAATAAGGAAAGTGGTAATTCAATAGAGGAGTTGAAATTAAGAGTTGCATATATCTCTGCTGCCTCACCCGAAGGATCTGAAGATGATGCATCACGGAACTCACATAAACTTGATACCTCTTCTAGTCAGGCTTTACAGGATCTGAAGGAAGAAAGAGATGCCGCTGCCAGACAAACAAGACAACTGCAACAGGAACTGGACATGATGAAAAGACGAAGAAACCGAAAAAGTGATCCTGGCTTTTCCTTCATCTTTGCCATTTTTGTGGGTGTCCTTGGAGTTTTACTTGGCTTTCTTTTGAAACTTTTATTCTCTTCTCCATCTAGAGAATGA 657 0.4323 MTASQLISVSPDELRFHFELEKQTFCDLKVLNNTQNHVAFKVKTTSPKKYFVRPNTGVVHPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVNPNTDVDDLPPDTFNKESGNSIEELKLRVAYISAASPEGSEDDASRNSHKLDTSSSQALQDLKEERDAAARQTRQLQQELDMMKRRRNRKSDPGFSFIFAIFVGVLGVLLGFLLKLLFSSPSRE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01307 218 Pfam MSP (Major sperm protein) domain 7 104 IPR000535 -
Phco4g01307 218 PIRSF VAMP_assoc_prot 1 155 IPR016763 GO:0005789
Phco4g01307 218 PIRSF VAMP_assoc_prot 127 210 IPR016763 GO:0005789
Phco4g01307 218 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Phco4g01307 218 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 5 207 IPR016763 GO:0005789
Phco4g01307 218 SUPERFAMILY PapD-like 3 131 IPR008962 -
Phco4g01307 218 MobiDBLite consensus disorder prediction 153 168 - -
Phco4g01307 218 Coils Coil 153 180 - -
Phco4g01307 218 MobiDBLite consensus disorder prediction 131 168 - -
Phco4g01307 218 Gene3D Immunoglobulins 2 128 IPR013783 -
Phco4g01307 218 FunFam Vesicle-associated protein 1-1 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01307 Phco-Chr4 11209728 11213503 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00769 8 7700577 7703170 Phco4g01307 4 11209728 11213503 PCT