Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01295 ATGGGTTGTTTCCACTCCAAAGTAAGTGAATTTCCCATGGAAGATCCGTTTGCTCTTGCATCTGAGACAGCTTTTAGCGTCAGTGATGTTGAAGCACTATATGAGCTTTTTAAGAATATTAGCAGGTCCGTCATCGATGATGGTCTGATAAGTAAGGAAGAATTTCAACTGGCAATTTTTAATAATAAGAAGAAGGAAAATCTCTTTACGAGTCGGATTTTTGATCTATTTGATGTGAAGAAGAAAAGAGTGATTGACTTTGGTGATTTCGTTAGAGCACTCAATGTTTTTCACCCATCTTCACCAATAGAAGTCAAAATAGATTTTTCGTTTAAGCTGTACGATTTAGATAATACAGGATTCATAGAGCGTCACGAGGTGAAGCAAATGATAAATGCCCTTCTATGTGAAGCAGAAATTAAGTTATCAGATGAAATGATAGAAACAATCATTAATAAGACTTTCATGGATGCTGACCCTAATCAAGATGGGAAAATAGACAAATATGAGTGGAAAAACTTTGTTTACGAAAACCCTTCATTGTTAAAAGTCATGACGTTACCCTACTTGAGGGACGTAACAACTGCGTTTCCAAGTTTTGTATTTCATTCAAAGGTGGAAGATGAAATTACAGAATAA 639 0.3537 MGCFHSKVSEFPMEDPFALASETAFSVSDVEALYELFKNISRSVIDDGLISKEEFQLAIFNNKKKENLFTSRIFDLFDVKKKRVIDFGDFVRALNVFHPSSPIEVKIDFSFKLYDLDNTGFIERHEVKQMINALLCEAEIKLSDEMIETIINKTFMDADPNQDGKIDKYEWKNFVYENPSLLKVMTLPYLRDVTTAFPSFVFHSKVEDEITE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01295 212 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Phco4g01295 212 SMART efh_1 106 134 IPR002048 GO:0005509
Phco4g01295 212 SMART efh_1 150 178 IPR002048 GO:0005509
Phco4g01295 212 SMART efh_1 69 97 IPR002048 GO:0005509
Phco4g01295 212 PRINTS Recoverin family signature 166 186 - -
Phco4g01295 212 PRINTS Recoverin family signature 120 138 - -
Phco4g01295 212 PRINTS Recoverin family signature 73 94 - -
Phco4g01295 212 FunFam calcineurin B-like protein 3 15 208 - -
Phco4g01295 212 Gene3D - 15 209 - -
Phco4g01295 212 CDD EFh 106 175 IPR002048 GO:0005509
Phco4g01295 212 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Phco4g01295 212 Pfam EF-hand domain pair 106 174 IPR002048 GO:0005509
Phco4g01295 212 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Phco4g01295 212 PANTHER CALCINEURIN B 2 208 IPR045198 GO:0005509|GO:0019722|GO:0019900
Phco4g01295 212 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Phco4g01295 212 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Phco4g01295 212 SUPERFAMILY EF-hand 19 200 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01295 Phco-Chr4 11104288 11106986 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01295 4 11104288 11106986 Phco4g01295 4 11104288 11106986 ECH
Phco4g01295 4 11104288 11106986 Phco8g00839 8 8558505 8561438 PCT