Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01252 ATGAAATCCGAATCCGATTCATCTTCCAATTTGGACAATGGATGGATGGTGCCCTATAAATACTATCATGTCAAGGGTCCCATTTCTGATTCAAACCCTAATGTTGACTCGTCTAGATGGGTTTTGTGCAATGAGGTTCAATTGAAAGACATTTCGTTGAAATGCATGGAAATTATATACAACGATACTGTGTCAAAGCTTGTTGCTTTGGGGCACAATGAGGATATTGTTGGAAAAATCGGATTCATCAAAGATATTGCCGTGAAAGCGATTCTGCACGATGTTCATTGTTATGGCGCCAACGATTTGGCAACAGACCTGCTGCACAACACCTTGGCTTGTTTGACAAAGGGGAGCTTGGACATTTATGAGTCCAAGCCTGCGTTCTCTGATTTGAAGAAGCTTGAGGAGTACACTCTGATGAATCTTGTGTCTTTGTTGCAAGAAGTGAGGCTCGAGTTAGGTGAGGGTGATGCTATGTGGTGTCTCCTCATGAGCGATTACAATGTGTTAAAGGCAATGACCGTCCATATTCCTGTTGTAAGCATGTGTCCTCCTCCTTTAACCGAGCTTGAGAACGAGGAAGGGGGATTTAGAAAAGAGGGAGGCTCAGATATTCCTTTGAAAGGGTTCTTTTGTGGTAAGGAGATGACTGTACGGTTACAGAGAGATATTGAATTCCCGAAAAGATTTGATCTTACTCCTGCGATGATTTGTTCGTTGAAAAGCAATGTTGCAGTGTTTGCTGATGGTTATAAGGCCAACTCAAAACAGGTCCAGTCAAATGCAGGAAAACTTCCTGTGATTAGCACTGTTTCGAAATTGGACTCTTCGTCTGTTTCTGTGACTGCAGTCCTTGGTGATCTGTCTGGTGACTCTAAGAATATGAATGACCAGGATGACTTTAACTCTGTGCTGAGTAAATTTCATGATCTAAATATTGATGAGAACTTGGAGTTTATGGCAGAAGATGAGAAGAATTCGGTGATAGTCACTCTATTGCATCAGATAAAGGATCTTGAGAAACAGGTCAAGGAGCGGAAAGATTGGGCTTATGAGAAGGCAATTCAAGCTGCAAAAAAGCTTAACAGCTATCTAATTGAGCTGAAAACATTCAGGATAGAAAGAGAGGAGAATCAAAGACTGAAGAAGGGGAAAGAGGAAAATGAGGAGCTTGAGGACCCTACCATGGTGAGACTCTTAGAAATGGAGGAGGCCTTGAGAAAGGCGTGTGGTCAAATGGATCTAGCAGCTGCAGGAGTCGGAAAACTTGAGGCGCAGAAAGCTGAAATCAAAGCAGAGTTAGAAGCTTGTAAATTAAGTGCATCAGAGTCAGTCGCAAGCTGCTTGCAAATTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAGCTTCTGGCTTGGGAAAAACAGGAAGCGAAGATAAAACAGGATATTTCAGATGAAAAACAGAAGATTTTGGAGATACAAGAAGAGTTGGCTGAGATTAAACAACGGGCAAAAGAAGCTGAGGTCATGAAGGGTGAAGAGTTAAAGGCTAAGGAGGAAGCCTTAGCACTGATTGAAGAGGAACGCCGTTCCGTGGAAGCAGCTGAGGCTAATAGAAAAAGAAATCTTAAGGCTTTAAGCCTGAAGATGGAGATAGATTTCCAGCGTCGCAAGGATGATCTCCTAAGACTGGAGCAGGAGATTTCGTGTCTTAAAGCATCTGCACAGTCGGCTATTTTGCCTACAAGTGAGTCTGAGGGTGCAGAGCCCCACAGAGAGATAATTGCTAAGCTTCTGCAAGAATTAGAGAATGTGCCGGATTTTTCTGGAAAAGAAGCCACCGGTAATACTGATAGAGAATGCATCATCTGTGGAAAAGATGAGGTTTCCGTAATTTTCTTGCCATGTGCACACCAAGTTATGTGTGCCAGTTGCAGTAAAGAGTATGGGAGAAATGGCAAAGCTATTTGTCCATGCTGTTGGGTTCCAATCGAACAGAGAAATCGTATATTTGGGGCAAGTAGAGTTCCTCGGTCCAACAGAGCCCAAGTTTCAGACCTACCAGAAAAGATAAATCAGAAGCGGGGTCTCCGTCCTGTCCACCCAAGCCTCAATGAGTTAGAGCTAGGTCAACCAGAGCTAGACAAAATGGTTCCCAAAGTTTATGCTGGCAAGGAAATGGTGGTTGAGAATGAGAGTTGCATAATGAACGGTAACTGGAAGAAACGTGTGCATGTTTTTGGTGAGAGGGTGAGGAGACTTCCTACCAAGGCTTGTCAAACTACATGGAGGGTGGGGCGTGAAGATCCAAGAAGGTTGATCCATGCATTCAAAGTGGGTTTGTCTCTCACTCTGGTTTCTTTGTTGTATTTGTTGGAGCCATTTTACAAGACGATTGGACAGAGTGCTATTTGGGCTGTCATGACTGTGGTGGTTGTGTTGGAATTCACAGCAGGGGCAACTTTGTGCAAAGGGCTCAACAGAGGATTGGGAACACTGTTAGCAGGATTATTGGCATTTATTGTTGGGTATGTTGCAAATGCATGTGGCCGAGCCTCTCAAGCTATCATCATTGGAGCTGCAGTTTTTTTTATAGGAGCTCTAGCTACATATATGAGGTTTATTCCCTATATAAAGAAGAATTATGACTATGGTATAGTTATATTTCTCTTGACTTTCAACCTGATTGCTGTGTCAAGCTACCGGGTTGATAATGTGTTGAAGATTGCACATGAGCGTGTATACACCATTGCCATAGGCTGTGCTGTTTGCCTTCTCATGAGTCTACTGGTATTTCCAAATTGGTCAGGAGAAGACCTCCATAATTCCACTGTTTACAAGCTTGAAGGCCTTGCCAAATCAATAGAAGCTTGTGTGAATGAATATTTTTATGGAGAAATAGAAGGATCTGGAGATATAAAATTGTCTGAGGATCCAATATACAAAGGTTATAAGGCTGTTTTGGATTCAAAATCCATTGATGAGACACTGGCATTGCATGCAAGTTGGGAGCCAAGGCATTCCAGGTACTGTCATAGATTTCCATGGCAGCAATATGTAAAAGTTGGAGCTGTTCTGCGTCAATTTGGTTATACTGTGGTGGCCTTACATGGCTGTTTGAGAACTGAAATCCAGACACCACGATCTGTGAGAGCCATGTTCAAGGACCCTTGCATTCGGCTTGCAGCAGAGGTATCGAAAGTACTGATAGAACTTTCCAACAGCATAAGGAATCGCAGGCATTGCTCTCCAGAAATACTCTCTGATCATCTGCACGAAGCCCTGCAGGACCTGAACACTGCCATAAAATCTCAACCTCGGCTCTTCTTAGGCCCCAAACACAGGCACAACCAAGCCAGCAACATGTTCAAAATAGCTGCAGAACAAGTTGGACATGGAAAGACCTCCCTTTCAAGTGTTAAAACGGACTCTTCAGCATTGCTGGAGTGGAAAAACAAAAGGGTTGGCACTGAACAGACAAAGGAATCAGAACGAAAGTCTCTTAGGCCCCAACTGAGTAAAATTGCAATCACTAGCCTTGAGTTCTCTGAGGCTCTTCCTTTTGCTGCCTTTGCATCTTTGCTTGTGGAAACAGTTGCTAAACTGGATCTTGTCATAGAGGAAGTTGAGGAACTGGGGAGATTAGCATGCTTTAAAGAGTTTATACCTGGTGATGACTTTGTTGTCACTTGTGACGAGCCTCGAATTGATGTCTTTCACAACCATTTACCATCTCATGGAGTCGACTGA 3732 0.4317 MKSESDSSSNLDNGWMVPYKYYHVKGPISDSNPNVDSSRWVLCNEVQLKDISLKCMEIIYNDTVSKLVALGHNEDIVGKIGFIKDIAVKAILHDVHCYGANDLATDLLHNTLACLTKGSLDIYESKPAFSDLKKLEEYTLMNLVSLLQEVRLELGEGDAMWCLLMSDYNVLKAMTVHIPVVSMCPPPLTELENEEGGFRKEGGSDIPLKGFFCGKEMTVRLQRDIEFPKRFDLTPAMICSLKSNVAVFADGYKANSKQVQSNAGKLPVISTVSKLDSSSVSVTAVLGDLSGDSKNMNDQDDFNSVLSKFHDLNIDENLEFMAEDEKNSVIVTLLHQIKDLEKQVKERKDWAYEKAIQAAKKLNSYLIELKTFRIEREENQRLKKGKEENEELEDPTMVRLLEMEEALRKACGQMDLAAAGVGKLEAQKAEIKAELEACKLSASESVASCLQIAKREKKCLKKLLAWEKQEAKIKQDISDEKQKILEIQEELAEIKQRAKEAEVMKGEELKAKEEALALIEEERRSVEAAEANRKRNLKALSLKMEIDFQRRKDDLLRLEQEISCLKASAQSAILPTSESEGAEPHREIIAKLLQELENVPDFSGKEATGNTDRECIICGKDEVSVIFLPCAHQVMCASCSKEYGRNGKAICPCCWVPIEQRNRIFGASRVPRSNRAQVSDLPEKINQKRGLRPVHPSLNELELGQPELDKMVPKVYAGKEMVVENESCIMNGNWKKRVHVFGERVRRLPTKACQTTWRVGREDPRRLIHAFKVGLSLTLVSLLYLLEPFYKTIGQSAIWAVMTVVVVLEFTAGATLCKGLNRGLGTLLAGLLAFIVGYVANACGRASQAIIIGAAVFFIGALATYMRFIPYIKKNYDYGIVIFLLTFNLIAVSSYRVDNVLKIAHERVYTIAIGCAVCLLMSLLVFPNWSGEDLHNSTVYKLEGLAKSIEACVNEYFYGEIEGSGDIKLSEDPIYKGYKAVLDSKSIDETLALHASWEPRHSRYCHRFPWQQYVKVGAVLRQFGYTVVALHGCLRTEIQTPRSVRAMFKDPCIRLAAEVSKVLIELSNSIRNRRHCSPEILSDHLHEALQDLNTAIKSQPRLFLGPKHRHNQASNMFKIAAEQVGHGKTSLSSVKTDSSALLEWKNKRVGTEQTKESERKSLRPQLSKIAITSLEFSEALPFAAFASLLVETVAKLDLVIEEVEELGRLACFKEFIPGDDFVVTCDEPRIDVFHNHLPSHGVD 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01252 1243 ProSiteProfiles Zinc finger RING-type profile. 615 654 IPR001841 -
Phco4g01252 1243 Coils Coil 470 504 - -
Phco4g01252 1243 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 750 1215 - -
Phco4g01252 1243 Coils Coil 509 539 - -
Phco4g01252 1243 CDD RING-HC_MIP1-like 610 664 - -
Phco4g01252 1243 Pfam Family of unknown function (DUF6592) 87 175 IPR046527 -
Phco4g01252 1243 Coils Coil 421 441 - -
Phco4g01252 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 666 IPR013083 -
Phco4g01252 1243 SUPERFAMILY RING/U-box 596 661 - -
Phco4g01252 1243 Pfam Zinc finger, C3HC4 type (RING finger) 612 660 - -
Phco4g01252 1243 Pfam Aluminium activated malate transporter 757 1207 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01252 Phco-Chr4 10599126 10614205 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01252 4 10599126 10614205 Phco4g01252 4 10599126 10614205 ECH