Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01247 ATGAGAACGTCGCCGCGGAGGTTCAAGAAGTATATAGCGGAAGCAGCCACCGGCATCTCCGATCCGGTGTATCAGCTTCCAAATTCTCCGACGAAAAGCTTTCGAAGAAGAGGAACTATCAGATACGGCGAAGATCCGAGACTAGGACCAGCAGCAAGGCAACACTTCAACCGTATTGAGCAATGTTCTTTAACAGCACGTGCATCTCCCCCCAAAGCCCGCCTCGGTGTTCCCTCTCTGCCCCTCTCATTCTCTTTCTTATATATACCCTTCCCTTTTCTAATTTCTTGCTCTTTCTTCTTCTCCTCTTCCCTTCCTGCACTCGCGCACGCACCTCCTTCTCCAATCACTGCGTTTTTTCTCGATCAAATCCAATATCCGTTCTCTCTTCACGCATTCCGAACCCACCACCGCTCTGCGATCCGCATTCTGCTTTCGCCTTCCGCTCTCCGTACACCCGCCATGGATTCTCGGGAACCGCATCAGCAATCGCAATTGCCAAACATGATGGTGGGACCCACCTCCTACCCTTCCATGTTGGCTCCTGCCACCGCCCGATTCCCTTTCATCAACAGCAACCACCATCACCACAACCCTCCTCCACCACCACCTCCTCCCGAGCCTCTCAACGACAACAACACGTGCGAGGCTGCGCTGAAGCCGTGCGCGCTTGGAGTGGGTTCCTCGGAGTCCTCGAAGAAGAAGAGGGGCCGGCCCAGAAAGTACTCGCCAGATGGCAACATTGCGTTGGGCCTTGTCCCCAACCACGCCGCCGCTTCCTCTGCCGAACCTCCAGCCAAGAAGCACCGCGGACGCCCCCCTGGTTCCGGCAAGAAACAGATGGACGCCCTTGGAATATCTGGAACTGGTTTCACTCCCCATGTTATATCAGCCGAAGCTGGCGAGGACATTGCTGCAAAAATTATGGCCTTCTGTGAGCAAGGACCACGAACAGTTTGCATTCTTTCTGCTATTGGTCCTATCCGCAATGTCACTATTCGACAGCCGCCCTCTGCCTCCACCCTGTCTGGCCCTGATGTGTCGTATGAGGGTGAATTTGAGATCATATCACTTTCAGGTTTTACTCAACAATCTGAAAATAATAGTGGTCATAACGGAATACGTTCCTTGAATGTGAGTTTGGCAGGTCCTGATGGACGAGTATTGGGTGGCGAAGTTGCTGGAGCTCTTACTGCAGCGTCGGCAGTGCAGGTCGTTGTGGGTAGCTTTATTGCAGATGGAAAAAAGTCTAGCTCAAGTAACCTGAAATCTGGACGTTCTACCACGCCATCATCTCAATTGTTAACTTTTGGTGCTCCTACTACTCCAACCACTCCTACTTCTCAAGGGCCTTCAACCGAGTCATCTGAGGATAACGAGAATAGTAATTTTATTAAAGGCCCAGGAGTCCCGGGACTCTTTAATAATGCCAGTCAGCCTATTCATGACCTGCAGATGTACCATCATCAACTGTGGGCTGGCCATACTCAGCAGTGA 1497 0.519 MRTSPRRFKKYIAEAATGISDPVYQLPNSPTKSFRRRGTIRYGEDPRLGPAARQHFNRIEQCSLTARASPPKARLGVPSLPLSFSFLYIPFPFLISCSFFFSSSLPALAHAPPSPITAFFLDQIQYPFSLHAFRTHHRSAIRILLSPSALRTPAMDSREPHQQSQLPNMMVGPTSYPSMLAPATARFPFINSNHHHHNPPPPPPPPEPLNDNNTCEAALKPCALGVGSSESSKKKRGRPRKYSPDGNIALGLVPNHAAASSAEPPAKKHRGRPPGSGKKQMDALGISGTGFTPHVISAEAGEDIAAKIMAFCEQGPRTVCILSAIGPIRNVTIRQPPSASTLSGPDVSYEGEFEIISLSGFTQQSENNSGHNGIRSLNVSLAGPDGRVLGGEVAGALTAASAVQVVVGSFIADGKKSSSSNLKSGRSTTPSSQLLTFGAPTTPTTPTSQGPSTESSEDNENSNFIKGPGVPGLFNNASQPIHDLQMYHHQLWAGHTQQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01247 498 ProSiteProfiles PPC domain profile profile. 288 432 IPR005175 -
Phco4g01247 498 MobiDBLite consensus disorder prediction 415 463 - -
Phco4g01247 498 CDD DUF296 292 410 IPR005175 -
Phco4g01247 498 Pfam Plants and Prokaryotes Conserved (PCC) domain 293 410 IPR005175 -
Phco4g01247 498 MobiDBLite consensus disorder prediction 195 210 - -
Phco4g01247 498 MobiDBLite consensus disorder prediction 153 175 - -
Phco4g01247 498 Gene3D - 293 423 - -
Phco4g01247 498 MobiDBLite consensus disorder prediction 189 280 - -
Phco4g01247 498 MobiDBLite consensus disorder prediction 415 477 - -
Phco4g01247 498 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 195 459 IPR039605 GO:0003680
Phco4g01247 498 SMART AT_hook_2 267 279 IPR017956 GO:0003677
Phco4g01247 498 SMART AT_hook_2 233 245 IPR017956 GO:0003677
Phco4g01247 498 MobiDBLite consensus disorder prediction 157 172 - -
Phco4g01247 498 SUPERFAMILY AF0104/ALDC/Ptd012-like 290 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01247 Phco-Chr4 10562802 10569992 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01247 4 10562802 10569992 Phco8g00894 8 9131541 9136207 PCT